Glyma06g42090 - SoyBase

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Report for Sequence Feature Glyma06g42090

Feature Type:	gene_model
Chromosome:	Gm06
Start:	45310108
stop:	45320415
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g42090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G27100	AT	Annotation by Michelle Graham. TAIR10: Ypt/Rab-GAP domain of gyp1p superfamily protein \| chr4:13595845-13598620 FORWARD LENGTH=433	SoyBase	E_val: 0	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
KOG2197	KOG	Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins	JGI		ISS
PTHR22957	Panther	TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN	JGI		ISS
PTHR22957:SF30	Panther	GTPASE ACTIVATING PROTEIN-RELATED	JGI		ISS
PF00566	PFAM	TBC domain	JGI		ISS
UniRef100_G7JF10	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: TBC1 domain family member n=1 Tax=Medicago truncatula RepID=G7JF10_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233959B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233959B related cluster n=1 Tax=unknown RepID=UPI000233959B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g42090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g42090

Paralog	Evidence	Comments
Glyma12g16370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g42090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g269900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g42090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g42090

Limit To All Plant Sequences

>Glyma06g42090.2   sequence type=CDS   gene model=Glyma06g42090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGAGAGATCCTGGGGCTCCCGCTGATTCTTTCTATGAAACTCGTCCTGAGTGCACCGATGTTCCCAAGTCTCGATTTAGGATCAAGGCTGGCAAAACATTAAGTGCAAGAAAATGGAATGCTGCATTTTCTCCAGAAGGGTATCTAGATATAGGCAAGACTCTAAGTCGAATTCATCGTGGGGGAATCCATCCATCAATTAGAGGAGAAGTTTGGGAATTTCTACTTGGTTGCTATGATCCCAAGAGTACATTTCAAGAAAGAGATGAGATAAGACAACGTCGTAGGGAGCAATATGCTACTTGGAAGGAAGAATGTCGTAAATTATTTCCTCTCATAGGAAGTGGTAGATTTATCACAGCACCTATAATTACAGAAGATGGTAGACTAGTTCAAGATCCCTTGGTTTTGTTAGAAAATAATCCAGAGAATGGAGTGATTATACCCCAAGAGGTTACCACTAATGCTACAAATAACTTAGAAAAGGTGACAGACAAGGGAATAATTCAATGGATGTTAACACTCCATCAAATAGGTCTTGATGTGATCCGCACCGATAGAACAATGGTTTTTTATGAAAAGAAAGATAACTTATCAAAACTTTGGGATATTCTCAGTGTTTATGCTCGAATAGATTCAGATGTTGGTTATGGTCAAGGAATGAGTGACCTATGCTCTCCTATGATAATACTTCTTAATGATGAAGCTGATGCATTTTGGTGCTTTGAGCGTTTGATGCGTAGACTGCGAGGAAATTTTAGATGCACTGATAACTCTGTTGGTGTTGAGGCTCAATTAAGTACTTTGGCTACAATCACTCAAGTAATAGACCCAAAACTTCATCAACATATAGAACATATTGGTGGAGGCGACTATCTGTTTGCTTTTCGAATGATAATGGTTCTATTTCGACGAGAATTCTCTTTTTGTGATTCATTGTACCTTTGGGAGATGATGTGGGCTCTAGAATATGATCCCAACTTGTTTTGGATGTACGAGGATGTTGATGACAAATCAGAGGAATCTAAAGGAAGATTAAAGTCATTGCGCCACTATGGAAAGTACGAGAGAGAAAATATGAAAAATGGAGGAAAGAATGGTGAAGATCCTCCCCTTCCCATATCTGTTTTTCTTGTTGCTAGTGTGCTTAAAGACAAAAGCACAATGTTACTCCAGCAAGCGCGAGGCTTGGATGATGTTGTCAAGATATTGAATGATGTAAATGGAAATCTTGATGCCAAAAAAGCTTGTGTGGCTGCATTAAAACTTCACAAGAAATATTTGAAAAAGGCCAAGAATCCTTAG

Predicted protein sequences of Glyma06g42090

Limit To All Plant Sequences

>Glyma06g42090.2   sequence type=predicted peptide   gene model=Glyma06g42090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWRDPGAPADSFYETRPECTDVPKSRFRIKAGKTLSARKWNAAFSPEGYLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYDPKSTFQERDEIRQRRREQYATWKEECRKLFPLIGSGRFITAPIITEDGRLVQDPLVLLENNPENGVIIPQEVTTNATNNLEKVTDKGIIQWMLTLHQIGLDVIRTDRTMVFYEKKDNLSKLWDILSVYARIDSDVGYGQGMSDLCSPMIILLNDEADAFWCFERLMRRLRGNFRCTDNSVGVEAQLSTLATITQVIDPKLHQHIEHIGGGDYLFAFRMIMVLFRREFSFCDSLYLWEMMWALEYDPNLFWMYEDVDDKSEESKGRLKSLRHYGKYERENMKNGGKNGEDPPLPISVFLVASVLKDKSTMLLQQARGLDDVVKILNDVNGNLDAKKACVAALKLHKKYLKKAKNP*

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