SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G28345 | AT | Annotation by Michelle Graham. TAIR10: ABC transporter family protein | chr3:10593921-10598775 REVERSE LENGTH=1240 | SoyBase | E_val: 0 | ISS |
| GO:0006200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ATP catabolic process | SoyBase | N/A | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0010048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vernalization response | SoyBase | N/A | ISS |
| GO:0010315 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin efflux | SoyBase | N/A | ISS |
| GO:0010540 | GO-bp | Annotation by Michelle Graham. GO Biological Process: basipetal auxin transport | SoyBase | N/A | ISS |
| GO:0010541 | GO-bp | Annotation by Michelle Graham. GO Biological Process: acropetal auxin transport | SoyBase | N/A | ISS |
| GO:0043481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light | SoyBase | N/A | ISS |
| GO:0048440 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carpel development | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| GO:0042626 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances | SoyBase | N/A | ISS |
| KOG0055 | KOG | Multidrug/pheromone exporter, ABC superfamily | JGI | ISS | |
| PTHR24221 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24221:SF96 | Panther | JGI | ISS | ||
| PF00005 | PFAM | ABC transporter | JGI | ISS | |
| PF00664 | PFAM | ABC transporter transmembrane region | JGI | ISS | |
| UniRef100_G7JF16 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ABC transporter B family member n=1 Tax=Medicago truncatula RepID=G7JF16_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D052 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D052 related cluster n=1 Tax=unknown RepID=UPI000233D052 | SoyBase | E_val: 0 | ISS |
|
Glyma06g42040 not represented in the dataset |
Glyma06g42040 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g16416 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g269300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g42040.1 sequence type=CDS gene model=Glyma06g42040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAAACAATAGTATGTTTCGTTATGCAGATGGAATGGACAAGTTGTTGATGTTCTTTGGGACCTTGGGAAGCCTTGGAGATGGACTACAAACCCCTCTCATGATGTACATTCTTAGTGATGTGATCAATGCCTATGGTGACAAGAATAGTCATTTGACAAGGCATGATGTGAACAAGTATGCTTTGAGGCTTTTTTGTGCTGCACTTGGAGTTGGACTTTCAGCTTTTATTGAAGGAATGTGTTGGACAAGAACTGCAGAGAGACAGGCTTCCAGAATGAGAATGGAATACCTAAAATCAGTCCTAAGACAAGAAGTTGGCTTCTTTGACACTCAGACTGCTGGTTCTTCAACAACCTACCAAGTTGTCTCCCTCATTTCCTCAGATGCAAATACAATCCAAGTTGTCTTGTGTGAGAAGATACCTGACTGCGTAGCTTACATGTCAACATTCCTATTCTGCCACATCTTGGCATTTGTACTTTCATGGAGACTTACACTGGCTGCCATACCACTGTCTGTCATGTTCATTGTTCCGGCACTTGTATTTGGGAAGATCATGTTGGATCTTGTAATGAAAATGATCGAGTCTTATGGGATTGCTGGTGGGATAGCAGAACAGGCAATATCTTCAATAAGAACTGTTTATTCATATGTTGGGGAGAATCAAACACTAACCAGATTTAGCAGTGCACTTCAGAAAACTATGGAATTTGGAATAAAGCAAGGTTTTGCAAAAGGGTTAATGTTGGGAAGTATGGGAGTTATTTATATAAGTTGGGGATTTCAGGCTTGGGTTGGAACTTTTCTGATCACTAATAAAGGAGAAAAAGGAGGCCATGTATTTGTAGCCGGCTTCAATGTCCTCATGGGAGGCTTGAGCATTTTAAGTGCCCTTCCAAATTTAACTGCCATCACAGAGGCAACTGCTGCTGTCACTCGCCTTTTCGAAATGATTGATCGAGTGCCGACTATAGATTCTGAAGATAAGAAAGGAAAGGCCTTATCATATGTGAGGGGAGAAATTGAATTTCAAGACGTCTACTTCTGTTACCCATCTAGGCCAGACACACCAGTCTTGCAGGGATTCAATCTCACTGTCCCAGCAGGCAAGAGTGTAGGCCTTGTGGGAGGGAGTGGTTCAGGTAAATCCACTGTCATACAACTGTTTGAAAGGTTTTATGACCCTGTTGAGGGAGTAATACTCTTGGATGGTCACAAGACTAATAGGCTTCAGCTCAAGTGGTTGAGATCTCAAATTGGCCTAGTAAATCAAGAGCCTGTTCTCTTTGCCACTTCCATAAAAGAGAATATATTGTTTGGAAAAGAAGGAGCCTCAATGGAAAGTGTGATTAGTGCGGCTAAAGCAGCTAATGCACATGATTTCATAGTCAAGTTGCCAGATGGATATGAAACTCAAGTTGGACAGTTTGGATTCCAACTGTCTGGTGGGCAGAAGCAACGCATTGCCATAGCAAGAGCCTTACTAAGGGATCCAAAGGTTCTCTTGCTTGATGAAGCTACCAGTGCACTGGATGCTCAGTCTGAAAGAGTGGTACAGGCAGCAATTGATCAAGCTTCAAAAGGAAGGACAACAATCATCATTGCTCACCGTTTGTCTACAATTCGAACGGCTAACTTGATTGCAGTCCTTCAAGCAGGGAGAGTCGTTGAATTAGGTACACATAATGAACTCATGGAATTGACTGATGGTGAGTATGCTCACATGGTAGAGTTGCAGCAAATAACAACTCAGAATGATGAATCCAAACCTTCCAATCTTCTAACAGAGGGAAAGAGCTCCCACAGAACGAGCATTCCTCAAAGTCCAACTGTAAGTTTCAGATCAAGCACTGTAGGAACTCCCATGTTGTATCCCTTTAGTCAGGGATTTTCCATGGGAACACCTTACTCCTACTCTATCCAATATGACCCTGATGATGATAGTTTTGAAGATAACTTGAAAAGACCAAATCATCCAGCTCCTTCGCAGTGGCGTTTGCTGAAAATGAATGCACCTGAGTGGGGAAGAGCAATGCTAGGAATCTTAGGAGCAATAGGATCAGGAGCAGTACAACCTGTGAATGCATACTGTGTAGGAACACTTATTTCGGTTTATTTTGAAACTGATAGCTCTGAGATGAAGTCTAAAGCTAAAACCCTGGCCCTCGTTTTCTTAGGAATTGGTGTTTTCAACTTCTTCACTAGTATTCTCCAACACTATAACTTTGCAGTCATGGGAGAAAGATTGACCAAAAGAATAAGAGAGAAGATACTAGAGAAGTTGATGACTTTTGAGATAGGGTGGTTTGATCACGAAGATAACACAAGTGCATCCATTTGTGCAAGATTGTCCTCAGAAGCCAACTTGGTTCGTTCCCTTGTTGGCGATCGGATGTCTTTGTTGGCCCAAGCAATTTTTGGGTCTATCTTTGCCTACACTCTAGGACTTGTGCTCACATGGAAGCTTTCCCTTGTGATGATTGCAGTGCAACCATTAGTCATTGGAAGCTTTTACTCAAGAAGTGTCTTAATGAAGAGTATGGCCGAGAAAGCTCGTAAAGCGCAAAGGGAGGGAAGTCAACTTGCAAGTGAAGCTGTTATAAACCACAGAACCATAACTGCCTTCAGCTCTCAGAAAAGAATGTTGGCACTTTTCAAATCCACAATGGTGGGGCCTAAAAAGGAGAGTATTAGGCAGTCATGGATTTCAGGCTTTGGTCTTTTCAGCTCCCAGTTTTTTAACACTTCATCGACAGCATTGGCTTACTGGTATGGTGGGAGGCTCTTGATAGATGATCAAATAGAACCAAAGCACCTCTTCCAAGCATTTTTAATATTACTCTTCACTGCATACATTATTGCAGATGCTGGAAGCATGACTTCTGACTTGTCCAAAGGAAGCAGTGCAGTTGGATCAGTTTTCACAATCCTTGACAGGAAAACTGAGATTGATCCCGAGACCTCCTGGGGAGGCGAGAAGAAGAGGAAAATAAGGGGCAGAGTTGAGCTTAAGAATGTATTCTTTGCATATCCATCTAGACCTGATCAAATGATTTTCAAGGGGCTGAATCTTAAAGTTGAACCTGGGAGAACAGTGGCTCTAGTCGGGCACAGTGGTTGTGGTAAATCAACTGTCATTGGTCTTATTGAAAGGTTTTATGATCCTGCAAAGGGAACGGTGTGCATAGATGAACAAGACATCAAGTTCTATAACTTGAGAATGCTGAGGTCACAAATTGCATTAGTGAGTCAGGAGCCAACACTTTTTGCTGGCACCATTCGAGAAAACATTGCCTATGGGAAAGAAAACACTACTGAATCTGAGATAAGAAGGGCTGCATCTCTGGCTAATGCTCACGAATTCATAAGTGGAATGAATGATGGGTATGAGACATACTGTGGAGAAAGAGGAGTTCAGCTATCTGGAGGTCAGAAACAAAGAATAGCCTTAGCAAGGGCCATACTGAAGAATCCTGCAATACTGCTTCTGGATGAGGCTACTAGTGCACTTGATAGTGTGTCAGAGATCTTGGTCCAAGAAGCACTAGAGAAGATAATGGTTGGAAGAACATGCATTGTAGTGGCACACAGGCTCTCTACAATACAGAAATCCAACTACATTGCTGTTATTAAGAATGGGAAGGTTGTAGAACAAGGTTCACATAACGAATTGATTTCGCTTGGACATGAGGGTGCATACTATTCTCTTGTTAAACTTCAAGGTGGTAGCTCCCCTAGGTAA
>Glyma06g42040.1 sequence type=predicted peptide gene model=Glyma06g42040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGNNSMFRYADGMDKLLMFFGTLGSLGDGLQTPLMMYILSDVINAYGDKNSHLTRHDVNKYALRLFCAALGVGLSAFIEGMCWTRTAERQASRMRMEYLKSVLRQEVGFFDTQTAGSSTTYQVVSLISSDANTIQVVLCEKIPDCVAYMSTFLFCHILAFVLSWRLTLAAIPLSVMFIVPALVFGKIMLDLVMKMIESYGIAGGIAEQAISSIRTVYSYVGENQTLTRFSSALQKTMEFGIKQGFAKGLMLGSMGVIYISWGFQAWVGTFLITNKGEKGGHVFVAGFNVLMGGLSILSALPNLTAITEATAAVTRLFEMIDRVPTIDSEDKKGKALSYVRGEIEFQDVYFCYPSRPDTPVLQGFNLTVPAGKSVGLVGGSGSGKSTVIQLFERFYDPVEGVILLDGHKTNRLQLKWLRSQIGLVNQEPVLFATSIKENILFGKEGASMESVISAAKAANAHDFIVKLPDGYETQVGQFGFQLSGGQKQRIAIARALLRDPKVLLLDEATSALDAQSERVVQAAIDQASKGRTTIIIAHRLSTIRTANLIAVLQAGRVVELGTHNELMELTDGEYAHMVELQQITTQNDESKPSNLLTEGKSSHRTSIPQSPTVSFRSSTVGTPMLYPFSQGFSMGTPYSYSIQYDPDDDSFEDNLKRPNHPAPSQWRLLKMNAPEWGRAMLGILGAIGSGAVQPVNAYCVGTLISVYFETDSSEMKSKAKTLALVFLGIGVFNFFTSILQHYNFAVMGERLTKRIREKILEKLMTFEIGWFDHEDNTSASICARLSSEANLVRSLVGDRMSLLAQAIFGSIFAYTLGLVLTWKLSLVMIAVQPLVIGSFYSRSVLMKSMAEKARKAQREGSQLASEAVINHRTITAFSSQKRMLALFKSTMVGPKKESIRQSWISGFGLFSSQFFNTSSTALAYWYGGRLLIDDQIEPKHLFQAFLILLFTAYIIADAGSMTSDLSKGSSAVGSVFTILDRKTEIDPETSWGGEKKRKIRGRVELKNVFFAYPSRPDQMIFKGLNLKVEPGRTVALVGHSGCGKSTVIGLIERFYDPAKGTVCIDEQDIKFYNLRMLRSQIALVSQEPTLFAGTIRENIAYGKENTTESEIRRAASLANAHEFISGMNDGYETYCGERGVQLSGGQKQRIALARAILKNPAILLLDEATSALDSVSEILVQEALEKIMVGRTCIVVAHRLSTIQKSNYIAVIKNGKVVEQGSHNELISLGHEGAYYSLVKLQGGSSPR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
