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Report for Sequence Feature Glyma06g41995

Feature Type:gene_model
Chromosome:Gm06
Start:45216107
stop:45228070
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g41995
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G04790AT Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:2435007-2439344 REVERSE LENGTH=821 SoyBaseE_val: 1.00E-70ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR24015Panther FAMILY NOT NAMED JGI ISS
PTHR24015:SF225Panther JGI ISS
UniRef100_G7JF19UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7JF19_MEDTR SoyBaseE_val: 2.00E-115ISS
UniRef100_I1KEG5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KEG5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g41995
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g41995 not represented in the dataset
Glyma06g41995 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g41995 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g269100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g41995
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g41995
>Glyma06g41995.1   sequence type=CDS   gene model=Glyma06g41995   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGCGCCCCCACCGCAAGAAACCTATGTACCCTCAGCAACCTATTCCGCTCGAAGTTGTTAACCCGCAAACGCAACACCAACGTTGTCCCCTTCACAAAACCTTCTCCTGAATCCGAAGACGAAATGTACCTCTCCTCAGAACCTTACCTCGCTCGTGACACTTCCCAAGGGGATTCGTTTTACGAAAATGAGGATACCAATGAGCTATCTGATATATTGTGCTCTAAAGAGGACAAGAGGTGTGCTTTAGAGGAAATTGATGATGATGAAGAAAAGAGGAAACAAACTGTAGATATACCGTGGATACTGGACCTGTCTCATGGTAAGTTGTCGGAGAAACGGAAGGATGTAGCGCGTGAGAGGAAACAAAAGTGGATTTTTAAATACACGAGTGATGACCGTTTCGACAGGTTAATTAAAATGTGTGCAGATAAACTAGGAGTGGGAAAGACCGTTAATGTGTTTGGTCAATTGGGTCGAGAAACAGGTGTGAAAGAGTATAACACATTGATAAAAATGTGCGTAAAGAAGGCTAGGGCAACTGACGATGAATTCATTGGTGTAAGAGAAATGAGTAAGGCTTTTCACCTTTACAAATCAATGAGAGATCTTGGGTATCCACTAGAAGAGAAAACATATGGTCCACTTCTTCGGTATTTAGTTGATATGGGTTTGGTTCAAGAATTTCAACTTTTCACTGATATTATCAAAACAGAGAACCCTAGTTCAGCTTCACGATTGGGTTACTATGAAATGTTGCTGTGGTTGAGAGTTGGCAATGAAGAAATGATCCGGGATATTTGTGAATATATTACAGTCGAAGCTAGAGAAGAGACTTCTGCTTTACGAGAAAGTTACTTGATGGCTCTTTGTGAAAGTGATAGGAAAATGCAGATTTTGGATGTGGTGAAGAATATAGACGTCACAAAGCTTTCATCTGCAAAATCTATTGCTGATATATTCCAATCATTAGGCAGGCTCCATCTGGAATCTATTGCAGACGATTTACTTTTGGATTTGAGAGCATGTGATCATGATGCAGATAATATTTCAAACTTCATTGTTAGTTATGCTGTTAGCATCCCAAATTTAGCGGTAGAAGATATTATTCCAAAATTCAAGAATATGCATGAATTACTGGAAGTGTTGCCTTCAACCTCATCATATGAAAAGCTCATTTTGCATTGCTGTGGATTAGACAAGGGTTCCTAA
Predicted protein sequences of Glyma06g41995
>Glyma06g41995.1   sequence type=predicted peptide   gene model=Glyma06g41995   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRAPTARNLCTLSNLFRSKLLTRKRNTNVVPFTKPSPESEDEMYLSSEPYLARDTSQGDSFYENEDTNELSDILCSKEDKRCALEEIDDDEEKRKQTVDIPWILDLSHGKLSEKRKDVARERKQKWIFKYTSDDRFDRLIKMCADKLGVGKTVNVFGQLGRETGVKEYNTLIKMCVKKARATDDEFIGVREMSKAFHLYKSMRDLGYPLEEKTYGPLLRYLVDMGLVQEFQLFTDIIKTENPSSASRLGYYEMLLWLRVGNEEMIRDICEYITVEAREETSALRESYLMALCESDRKMQILDVVKNIDVTKLSSAKSIADIFQSLGRLHLESIADDLLLDLRACDHDADNISNFIVSYAVSIPNLAVEDIIPKFKNMHELLEVLPSTSSYEKLILHCCGLDKGS*






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