Glyma06g41771 - SoyBase

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Report for Sequence Feature Glyma06g41771

Feature Type:	gene_model
Chromosome:	Gm06
Start:	45072852
stop:	45075362
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g41771

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G05642	AT	Annotation by Michelle Graham. TAIR10: Nucleic acid-binding, OB-fold-like protein \| chr2:2098253-2100867 REVERSE LENGTH=532	SoyBase	E_val: 6.00E-17	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF02721	PFAM	Domain of unknown function DUF223	JGI		ISS
PF08646	PFAM	Replication factor-A C terminal domain	JGI		ISS
UniRef100_G7JLV9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Replication factor-a protein 1 (Rpa1) family protein n=1 Tax=Medicago truncatula RepID=G7JLV9_MEDTR	SoyBase	E_val: 6.00E-69	ISS
UniRef100_UPI000233957A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233957A related cluster n=1 Tax=unknown RepID=UPI000233957A	SoyBase	E_val: 2.00E-156	ISS

Expression Patterns of Glyma06g41771

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g41771 not represented in the dataset	Glyma06g41771 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g41771 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma06g41771

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g41771

Limit To All Plant Sequences

>Glyma06g41771.1   sequence type=CDS   gene model=Glyma06g41771   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAGGATTCCTGACAAGATTAGGTCTATTGATGGATCAAAAGAAGCGCTTAAGCTTGCTGTTAGGATCATCGATCTTTGGTTTGTTGGGACTCCTAACAAGTCTGAGCAATCGGAAATGGTTTTTGTTGATTCTGAGGGTGATCAAATTCATGCTATTTGTAAATCGGACCACCTCAAGTCTTGGAAAGCTGATTTGAAAGAGAATTGCACTTATGTTATGCATAATTTCAAAGTTGTTAAGAATGATGGTCAATTTAGAGTGTGCGAACATGAGTACAAGTTATTTTTTATTGGAGTGACGGTTGTTAGAGAAGCTAATTTGCATGAACTGCCTTTTAAGGAATTTAGATTTGTTGAATTTGCAAATGTTGTTGCTGGCAATTTTGTGTCTGGCCTGTTGGTTGATATTATGGGGTTGTTGATCAGTGGTGAAATTTTGTCTTGCACACTTTGGGAGAATTACTGTACTCAGTTCCTATCCTATTTGAATGAACGTGGGGATGATGGGCCGATGGTTATTATATTGACACATGCCAGAATAAAAGATGCACAGGGAAGTTATCCAGCTTCAGTGAGCAATTCCTTCAAGGCGTCAAAACTATTGATTAATGATCCTATATTGGAAATTCAGGAATTTAAAGAGAGGCTTTTAGATTTAGGTGTTGAGGTGAGTCGAGTTTTGCTACCTGGCGATCAAGCAACCTCACAAGTTTCAGGGGGAAGTCAGCTATCATCAAAGGATTCGTTTCTTTCAAAGGCTGAAGCCAAAACTATTTTAGAAATCGATGCCATTTCTGAGGACGTTGTTTGTGTTACGGTGGGGACTATTAGCAAAATAGTCATGGATAACCATTCATGGTCTTATCCAGCCTGTGCTCAATGTCATAGGAAAACTGACATCCAAACAGGACCATTCACATGTGGATGTGGCAAGGATAATGATCAGCCTGTTCTGAGGTATAAAGTTGAAGTCATGGTTACCCAAAACAATGAGAGCAGCACATTTTTGCTCTGGGACCATGAATGTGCTGAATTGATTGGTGAAACAGCTGATGATGTGAATAGGGTCAAGATTGAACAATCTCTGTCTGTCACAGCTGACCATGATCTGGTTGCGGGATTGCCTTTAACACCCAAAAAGCGGATTCCATCTAATGAAGCCGATGATGAGTTAGGGAGCTCTCAAATTTCGCCAGCCCAACTATCGTCTAACAAATTAACAAGACATTCTCATAAAAGCTAA

Predicted protein sequences of Glyma06g41771

Limit To All Plant Sequences

>Glyma06g41771.1   sequence type=predicted peptide   gene model=Glyma06g41771   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARIPDKIRSIDGSKEALKLAVRIIDLWFVGTPNKSEQSEMVFVDSEGDQIHAICKSDHLKSWKADLKENCTYVMHNFKVVKNDGQFRVCEHEYKLFFIGVTVVREANLHELPFKEFRFVEFANVVAGNFVSGLLVDIMGLLISGEILSCTLWENYCTQFLSYLNERGDDGPMVIILTHARIKDAQGSYPASVSNSFKASKLLINDPILEIQEFKERLLDLGVEVSRVLLPGDQATSQVSGGSQLSSKDSFLSKAEAKTILEIDAISEDVVCVTVGTISKIVMDNHSWSYPACAQCHRKTDIQTGPFTCGCGKDNDQPVLRYKVEVMVTQNNESSTFLLWDHECAELIGETADDVNRVKIEQSLSVTADHDLVAGLPLTPKKRIPSNEADDELGSSQISPAQLSSNKLTRHSHKS*

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