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Report for Sequence Feature Glyma06g41600

Feature Type:gene_model
Chromosome:Gm06
Start:44896986
stop:44903301
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G54670AT Annotation by Michelle Graham. TAIR10: kinesin 3 | chr5:22209912-22213843 FORWARD LENGTH=754 SoyBaseE_val: 0ISS
GO:0000226GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization SoyBaseN/AISS
GO:0000911GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation SoyBaseN/AISS
GO:0007018GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule-based movement SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003777GO-mf Annotation by Michelle Graham. GO Molecular Function: microtubule motor activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008017GO-mf Annotation by Michelle Graham. GO Molecular Function: microtubule binding SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
KOG0239 KOG Kinesin (KAR3 subfamily) JGI ISS
PTHR24115Panther FAMILY NOT NAMED JGI ISS
PTHR24115:SF170Panther SUBFAMILY NOT NAMED JGI ISS
PF00225PFAM Kinesin motor domain JGI ISS
PF07111PFAM Alpha helical coiled-coil rod protein (HCR) JGI ISS
UniRef100_G7JF36UniRef Annotation by Michelle Graham. Most informative UniRef hit: Kinesin-3 n=1 Tax=Medicago truncatula RepID=G7JF36_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1KEE8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KEE8_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma12g16580 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g266500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma06g41600.3   sequence type=transcript   gene model=Glyma06g41600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTGTTTTATGATTTTTATTTTTTATTTTTACTTTCTTCTCTCTCACTATTCACCTCTCTCTCTCTCTCTCTCTCCCTCTTCTTTGTGTTTGTGGATCATCCTCATTCATTCATCAATCTTCCTGCCTACTAAAGCAACAGTTTTTTTTTTTTTTATATATTGTTATTTGTTATCTTTCAAAACAATTCATGGCCCCACATTAGTCATAGTCTCTCTCTCTCTCTCTCATATGCTTCTCTAACTAAGTGCTTGTGCTTCAAAATGGTCACCAAAAACCAGAACTGGCCACCATTATCACTCACATCCACACCACCACCTCCTTCAAATTTGAAGTTTCATTGCACCACCATGCTTAAAAATATAGTCTTTTTATCATGTTGAGGATTCAAAATTTTGAGGGTGATGTGCTCTTCCTAGACAACAAAGAGCAAAGAGTTGGAGCAGAAACAATGGTGGGGACTCCAATTAATGGAAGAACCAGGCAAGCTTTCACAGTTGTCAATGGCGGTGGCCACGATCTTTGCCCCAGTAGTACTCCTCCAAGCAATGCTGGATCGGACTATGGTGTCATAGAGTTCACCAGAGAGGATGTGGAGGCATTGCTAAATGAAAAAGCCAAGAGAAAGGACAGATTTAATTATAAGGAACGATGTGAAAATATGATGGATTATATAAAAAGGCTTAAGGTTTGTATCAGATGGTTCCAAGACCTTGAGATGTACTACTCTCTAGAGCAGGAGAAGTTAAAGAATTCACTGGAAATGACCCAGAAAAAATGCATAGAAATTGAGTTGCTGCTTAAAATCAAGGAAGAAGAATTAAATTCAATTATCACAGAAATGAGAAGGAATTGCACTTCCTTACAAGAAAAATTGATCAAGGAAGAAATGGAAAAGTCGGCTGCAGTGGAGTCTCTTGTTAAAGAGAGAGAAGCTAGGCTTGACATTGAGAGGTCACATAGTACTCTGTCAGAGGACCTTGGAAGAGCACAACGAGAGATGCAAAGTGCAAATCAGAAGATAGCATCACTCAATGAAATGTATAAGCGGTTACAGGATTACATTACAAGCTTACAACAGTACAATGGAAAACTTCACTCTGAGCTTTCGTCGGTTGAGGATGAACTTAAACGCGTAGAAAAGGAGAAGGTTTCGGTAGTGGAGAACATCACCTTGTTAAGGGGTCAACTTACTGTATCCGTTTCTTCTCAAGAGGAGGCCATAAAACAGAAGGATGTCTTGGCTACAGAAGTTTCCTCTCTTAGAGGAGAGTTGCAACAAGTAAGAGATGAGCGAGACCGGCAATTATCTCAAGTACAAATTTTAAGTTCTGAATTAGAGAAAGTTAAAGAATCTACAAAACATTCCTCCACTGAATTGGACAGCTTGACGTTTAAAGCTAATGATCTGGAGGAAAAATGTTCTCTGAAAGATAATCAAATAAAGGCATTGGAAGAGCAGCTAGCAACTGCAGAGAAGAAACTGCAGGTGTCTGATATATCTGCATATGAGACAAGGACAGAATATGAGGGACAACAGATATTTGTGAATGAGTTACAAAGACGCTTAGCAGATGCAGAATATAAACTTATAGAAGGGGAGAGGCTGCGGAAAAAATTACATAATACCATTTTGGAATTAAAAGGGAACATTCGTGTATTTTGTCGTGTGAGGCCTTTATTAGCTGATGAAAGTTGTAGCACAGAAGGCAGGATTTTCAGTTATCCAACATCAATGGAAACTTCTGGACGAGCCATTGACCTAGCCCAAAATGGCCAAAAACATGCTTTTACATTTGATAAAGTTTTTACACCAGAGGCATCACAAGAAGAAGTTTTTGTGGAAATTTCACAGCTTGTGCAAAGTGCTCTTGATGGTTACAAGGTTTGCATCTTTGCCTATGGTCAGACAGGGTCAGGGAAGACCTATACAATGATGGGAAGGCCTGGACATCCAGAGGAGAAGGGCTTGATACCTCGTTCATTAGAACAAATATTTCAAACTAAGCAGTCTCAGCAACCTCAGGGCTGGAAATATGAAATGCAGGTGTCAATGTTGGAAATATACAACGAAACGATCCGTGATCTGATATCTACAACAACACGTGTGGAAAATGGTACTCCTGGAAAACAATATACAATCAAACATGACGTAAATGGAAATACACAAGTTTCTGATCTCACAGTAGTGGATGTTCATAGTGCTAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGATCTGTGGGAAAAACCCAGATGAATGAACAATCATCAAGAAGTCATTTTGTATTCACTCTTCGAATATACGGTGTAAATGAGAGCACTGACCAACAAGTACAAGGTGTTCTGAACCTTATTGATCTTGCTGGTAGCGAGCGGCTTTCAAAGAGTGGATCAACTGGGGACCGGTTGAAAGAAACTCAAGCAATCAACAAAAGTTTATCATCACTGAGTGATGTTATATTTGCCTTAGCCAAGAAGGAGGACCATGTGCCATTCAGAAACTCAAAGCTTACATATCTGCTTCAGCCTTGTCTAGGTGGAGACTCCAAGACACTAATGTTTGTGAACATATCACCTGATCCTTCTTCAGTTGGTGAGTCACTATGCTCACTCAGGTTTGCATCAAGAGTCAATGCTTGTGAGATTGGAACACCTCGGCGTCAAACCAATGGACGTTCAATAGAGTCTCGCTTGAGCTATTTCTAATCTTCAGAAATGTGTATTTGTTTTTTTTAACCATTTGTGGCAATCAAGAGCCTGTGTGAGTACCACAATAAAGTGAAAATGAAAATGAGATTGATTCTAACAGCGGCATATAGCTTGTATAGTGAAGAAAGTTACTAAGCTTGCATTTATAGAACCCATTCTAGTAGTCCAATTATTCTGCTTAACGTTATGTATTTATTTATTTATTTATAACATTTCTCTTATACAAATCTCGGAAAGGGGATTGTTTGTGATAATGGGAGTGGTAAACTAGTTTGATTACAAGCATATCCATAAAAAAAGATTTATTATAATAATTCAAAAGTGAAAG

>Glyma06g41600.2   sequence type=CDS   gene model=Glyma06g41600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGAGGATTCAAAATTTTGAGGGTGATGTGCTCTTCCTAGACAACAAAGAGCAAAGAGTTGGAGCAGAAACAATGGTGGGGACTCCAATTAATGGAAGAACCAGGCAAGCTTTCACAGTTGTCAATGGCGGTGGCCACGATCTTTGCCCCAGTAGTACTCCTCCAAGCAATGCTGGATCGGACTATGGTGTCATAGAGTTCACCAGAGAGGATGTGGAGGCATTGCTAAATGAAAAAGCCAAGAGAAAGGACAGATTTAATTATAAGGAACGATGTGAAAATATGATGGATTATATAAAAAGGCTTAAGGTTTGTATCAGATGGTTCCAAGACCTTGAGATGTACTACTCTCTAGAGCAGGAGAAGTTAAAGAATTCACTGGAAATGACCCAGAAAAAATGCATAGAAATTGAGTTGCTGCTTAAAATCAAGGAAGAAGAATTAAATTCAATTATCACAGAAATGAGAAGGAATTGCACTTCCTTACAAGAAAAATTGATCAAGGAAGAAATGGAAAAGTCGGCTGCAGTGGAGTCTCTTGTTAAAGAGAGAGAAGCTAGGCTTGACATTGAGAGGTCACATAGTACTCTGTCAGAGGACCTTGGAAGAGCACAACGAGAGATGCAAAGTGCAAATCAGAAGATAGCATCACTCAATGAAATGTATAAGCGGTTACAGGATTACATTACAAGCTTACAACAGTACAATGGAAAACTTCACTCTGAGCTTTCGTCGGTTGAGGATGAACTTAAACGCGTAGAAAAGGAGAAGGTTTCGGTAGTGGAGAACATCACCTTGTTAAGGGGTCAACTTACTGTATCCGTTTCTTCTCAAGAGGAGGCCATAAAACAGAAGGATGTCTTGGCTACAGAAGTTTCCTCTCTTAGAGGAGAGTTGCAACAAGTAAGAGATGAGCGAGACCGGCAATTATCTCAAGTACAAATTTTAAGTTCTGAATTAGAGAAAGTTAAAGAATCTACAAAACATTCCTCCACTGAATTGGACAGCTTGACGTTTAAAGCTAATGATCTGGAGGAAAAATGTTCTCTGAAAGATAATCAAATAAAGGCATTGGAAGAGCAGCTAGCAACTGCAGAGAAGAAACTGCAGGTGTCTGATATATCTGCATATGAGACAAGGACAGAATATGAGGGACAACAGATATTTGTGAATGAGTTACAAAGACGCTTAGCAGATGCAGAATATAAACTTATAGAAGGGGAGAGGCTGCGGAAAAAATTACATAATACCATTTTGGAATTAAAAGGGAACATTCGTGTATTTTGTCGTGTGAGGCCTTTATTAGCTGATGAAAGTTGTAGCACAGAAGGCAGGATTTTCAGTTATCCAACATCAATGGAAACTTCTGGACGAGCCATTGACCTAGCCCAAAATGGCCAAAAACATGCTTTTACATTTGATAAAGTTTTTACACCAGAGGCATCACAAGAAGAAGTTTTTGTGGAAATTTCACAGCTTGTGCAAAGTGCTCTTGATGGTTACAAGGTTTGCATCTTTGCCTATGGTCAGACAGGGTCAGGGAAGACCTATACAATGATGGGAAGGCCTGGACATCCAGAGGAGAAGGGCTTGATACCTCGTTCATTAGAACAAATATTTCAAACTAAGCAGTCTCAGCAACCTCAGGGCTGGAAATATGAAATGCAGGTGTCAATGTTGGAAATATACAACGAAACGATCCGTGATCTGATATCTACAACAACACGTGTGGAAAATGGTACTCCTGGAAAACAATATACAATCAAACATGACGTAAATGGAAATACACAAGTTTCTGATCTCACAGTAGTGGATGTTCATAGTGCTAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGATCTGTGGGAAAAACCCAGATGAATGAACAATCATCAAGAAGTCATTTTGTATTCACTCTTCGAATATACGGTGTAAATGAGAGCACTGACCAACAAGTACAAGGTGTTCTGAACCTTATTGATCTTGCTGGTAGCGAGCGGCTTTCAAAGAGTGGATCAACTGGGGACCGGTTGAAAGAAACTCAAGCAATCAACAAAAGTTTATCATCACTGAGTGATGTTATATTTGCCTTAGCCAAGAAGGAGGACCATGTGCCATTCAGAAACTCAAAGCTTACATATCTGCTTCAGCCTTGTCTAGGTGGAGACTCCAAGACACTAATGTTTGTGAACATATCACCTGATCCTTCTTCAGTTGGTGAGTCACTATGCTCACTCAGGTTTGCATCAAGAGTCAATGCTTGTGAGATTGGAACACCTCGGCGTCAAACCAATGGACGTTCAATAGAGTCTCGCTTGAGCTATTTCTAA

>Glyma06g41600.3   sequence type=CDS   gene model=Glyma06g41600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGAGGATTCAAAATTTTGAGGGTGATGTGCTCTTCCTAGACAACAAAGAGCAAAGAGTTGGAGCAGAAACAATGGTGGGGACTCCAATTAATGGAAGAACCAGGCAAGCTTTCACAGTTGTCAATGGCGGTGGCCACGATCTTTGCCCCAGTAGTACTCCTCCAAGCAATGCTGGATCGGACTATGGTGTCATAGAGTTCACCAGAGAGGATGTGGAGGCATTGCTAAATGAAAAAGCCAAGAGAAAGGACAGATTTAATTATAAGGAACGATGTGAAAATATGATGGATTATATAAAAAGGCTTAAGGTTTGTATCAGATGGTTCCAAGACCTTGAGATGTACTACTCTCTAGAGCAGGAGAAGTTAAAGAATTCACTGGAAATGACCCAGAAAAAATGCATAGAAATTGAGTTGCTGCTTAAAATCAAGGAAGAAGAATTAAATTCAATTATCACAGAAATGAGAAGGAATTGCACTTCCTTACAAGAAAAATTGATCAAGGAAGAAATGGAAAAGTCGGCTGCAGTGGAGTCTCTTGTTAAAGAGAGAGAAGCTAGGCTTGACATTGAGAGGTCACATAGTACTCTGTCAGAGGACCTTGGAAGAGCACAACGAGAGATGCAAAGTGCAAATCAGAAGATAGCATCACTCAATGAAATGTATAAGCGGTTACAGGATTACATTACAAGCTTACAACAGTACAATGGAAAACTTCACTCTGAGCTTTCGTCGGTTGAGGATGAACTTAAACGCGTAGAAAAGGAGAAGGTTTCGGTAGTGGAGAACATCACCTTGTTAAGGGGTCAACTTACTGTATCCGTTTCTTCTCAAGAGGAGGCCATAAAACAGAAGGATGTCTTGGCTACAGAAGTTTCCTCTCTTAGAGGAGAGTTGCAACAAGTAAGAGATGAGCGAGACCGGCAATTATCTCAAGTACAAATTTTAAGTTCTGAATTAGAGAAAGTTAAAGAATCTACAAAACATTCCTCCACTGAATTGGACAGCTTGACGTTTAAAGCTAATGATCTGGAGGAAAAATGTTCTCTGAAAGATAATCAAATAAAGGCATTGGAAGAGCAGCTAGCAACTGCAGAGAAGAAACTGCAGGTGTCTGATATATCTGCATATGAGACAAGGACAGAATATGAGGGACAACAGATATTTGTGAATGAGTTACAAAGACGCTTAGCAGATGCAGAATATAAACTTATAGAAGGGGAGAGGCTGCGGAAAAAATTACATAATACCATTTTGGAATTAAAAGGGAACATTCGTGTATTTTGTCGTGTGAGGCCTTTATTAGCTGATGAAAGTTGTAGCACAGAAGGCAGGATTTTCAGTTATCCAACATCAATGGAAACTTCTGGACGAGCCATTGACCTAGCCCAAAATGGCCAAAAACATGCTTTTACATTTGATAAAGTTTTTACACCAGAGGCATCACAAGAAGAAGTTTTTGTGGAAATTTCACAGCTTGTGCAAAGTGCTCTTGATGGTTACAAGGTTTGCATCTTTGCCTATGGTCAGACAGGGTCAGGGAAGACCTATACAATGATGGGAAGGCCTGGACATCCAGAGGAGAAGGGCTTGATACCTCGTTCATTAGAACAAATATTTCAAACTAAGCAGTCTCAGCAACCTCAGGGCTGGAAATATGAAATGCAGGTGTCAATGTTGGAAATATACAACGAAACGATCCGTGATCTGATATCTACAACAACACGTGTGGAAAATGGTACTCCTGGAAAACAATATACAATCAAACATGACGTAAATGGAAATACACAAGTTTCTGATCTCACAGTAGTGGATGTTCATAGTGCTAAAGAGGTTGCATTTCTTTTAAATCAAGCTGCAAATAGCAGATCTGTGGGAAAAACCCAGATGAATGAACAATCATCAAGAAGTCATTTTGTATTCACTCTTCGAATATACGGTGTAAATGAGAGCACTGACCAACAAGTACAAGGTGTTCTGAACCTTATTGATCTTGCTGGTAGCGAGCGGCTTTCAAAGAGTGGATCAACTGGGGACCGGTTGAAAGAAACTCAAGCAATCAACAAAAGTTTATCATCACTGAGTGATGTTATATTTGCCTTAGCCAAGAAGGAGGACCATGTGCCATTCAGAAACTCAAAGCTTACATATCTGCTTCAGCCTTGTCTAGGTGGAGACTCCAAGACACTAATGTTTGTGAACATATCACCTGATCCTTCTTCAGTTGGTGAGTCACTATGCTCACTCAGGTTTGCATCAAGAGTCAATGCTTGTGAGATTGGAACACCTCGGCGTCAAACCAATGGACGTTCAATAGAGTCTCGCTTGAGCTATTTCTAA

>Glyma06g41600.2   sequence type=predicted peptide   gene model=Glyma06g41600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRIQNFEGDVLFLDNKEQRVGAETMVGTPINGRTRQAFTVVNGGGHDLCPSSTPPSNAGSDYGVIEFTREDVEALLNEKAKRKDRFNYKERCENMMDYIKRLKVCIRWFQDLEMYYSLEQEKLKNSLEMTQKKCIEIELLLKIKEEELNSIITEMRRNCTSLQEKLIKEEMEKSAAVESLVKEREARLDIERSHSTLSEDLGRAQREMQSANQKIASLNEMYKRLQDYITSLQQYNGKLHSELSSVEDELKRVEKEKVSVVENITLLRGQLTVSVSSQEEAIKQKDVLATEVSSLRGELQQVRDERDRQLSQVQILSSELEKVKESTKHSSTELDSLTFKANDLEEKCSLKDNQIKALEEQLATAEKKLQVSDISAYETRTEYEGQQIFVNELQRRLADAEYKLIEGERLRKKLHNTILELKGNIRVFCRVRPLLADESCSTEGRIFSYPTSMETSGRAIDLAQNGQKHAFTFDKVFTPEASQEEVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGRPGHPEEKGLIPRSLEQIFQTKQSQQPQGWKYEMQVSMLEIYNETIRDLISTTTRVENGTPGKQYTIKHDVNGNTQVSDLTVVDVHSAKEVAFLLNQAANSRSVGKTQMNEQSSRSHFVFTLRIYGVNESTDQQVQGVLNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPDPSSVGESLCSLRFASRVNACEIGTPRRQTNGRSIESRLSYF*

>Glyma06g41600.3   sequence type=predicted peptide   gene model=Glyma06g41600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRIQNFEGDVLFLDNKEQRVGAETMVGTPINGRTRQAFTVVNGGGHDLCPSSTPPSNAGSDYGVIEFTREDVEALLNEKAKRKDRFNYKERCENMMDYIKRLKVCIRWFQDLEMYYSLEQEKLKNSLEMTQKKCIEIELLLKIKEEELNSIITEMRRNCTSLQEKLIKEEMEKSAAVESLVKEREARLDIERSHSTLSEDLGRAQREMQSANQKIASLNEMYKRLQDYITSLQQYNGKLHSELSSVEDELKRVEKEKVSVVENITLLRGQLTVSVSSQEEAIKQKDVLATEVSSLRGELQQVRDERDRQLSQVQILSSELEKVKESTKHSSTELDSLTFKANDLEEKCSLKDNQIKALEEQLATAEKKLQVSDISAYETRTEYEGQQIFVNELQRRLADAEYKLIEGERLRKKLHNTILELKGNIRVFCRVRPLLADESCSTEGRIFSYPTSMETSGRAIDLAQNGQKHAFTFDKVFTPEASQEEVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGRPGHPEEKGLIPRSLEQIFQTKQSQQPQGWKYEMQVSMLEIYNETIRDLISTTTRVENGTPGKQYTIKHDVNGNTQVSDLTVVDVHSAKEVAFLLNQAANSRSVGKTQMNEQSSRSHFVFTLRIYGVNESTDQQVQGVLNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEDHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPDPSSVGESLCSLRFASRVNACEIGTPRRQTNGRSIESRLSYF*







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