SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G05470 | AT | Annotation by Michelle Graham. TAIR10: Actin-binding FH2 (formin homology 2) family protein | chr3:1579667-1582547 REVERSE LENGTH=884 | SoyBase | E_val: 5.00E-117 | ISS |
| GO:0016043 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular component organization | SoyBase | N/A | ISS |
| GO:0030036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0048451 | GO-bp | Annotation by Michelle Graham. GO Biological Process: petal formation | SoyBase | N/A | ISS |
| GO:0048453 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sepal formation | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0003779 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: actin binding | SoyBase | N/A | ISS |
| KOG1922 | KOG | Rho GTPase effector BNI1 and related formins | JGI | ISS | |
| PTHR23213 | Panther | FORMIN-RELATED | JGI | ISS | |
| PF02181 | PFAM | Formin Homology 2 Domain | JGI | ISS | |
| UniRef100_G7ZXB2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Formin-like protein n=1 Tax=Medicago truncatula RepID=G7ZXB2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233958C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233958C related cluster n=1 Tax=unknown RepID=UPI000233958C | SoyBase | E_val: 0 | ISS |
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Glyma06g41550 not represented in the dataset |
Glyma06g41550 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g266000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g41550.1 sequence type=CDS gene model=Glyma06g41550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAATTCAAAAACATATGGTTAACATAAAGGTTACTTTTGGGGTTCTTTCGGTTCTTCTTCTTGTGGCAGCAGTCAGTTCTATAGAAAAGAAGGAAGCAGAGAATGATTTTGTTAGGGAGTTACTTGATCCAGCATCTGGATTGTTAGATGAGCACACGGAATTGTCTGGCAGCACCAATATAATCAGTTCAGAGATTCAACCAATAGAACAGGAAGAAATACAAAAATTTATCAGTTCTTACTGTCCACAATTCCTGGGGAACTTTCTTCACTGTTTGAGAAAAAATAATCATCCATTACCTGTCTCAGGAAAAGAAGATGATTCCAAGATTTGGCATGTCACTTATATGGGACCACTTTTTTCCCGTTCCAGTGATCCTGAAAGAAAATTTGGTCGTATTTTGCTCCAACACATATCAGAACCACCTAGTCCAGGTCCTGCAGTTGGATCACCTACACACAGTTTAGCGCCATCTCCTGAATCCAGTCTAGCACCATCATCTGAACCCAGTCTGGCCCCATCATCTGAACCCAGTCTGGCCCCATCACCTTTTGCTCCAGCACCTCTAGTTCATAAACCTTCGCATCCTTTACCACCAACATCATTTTTCCCAAAATTGACTCCACCAGAAGAAGCTTCAGAAATTTCTTCTCCATCTTCTGACATTAACAAACTGGAAGAGAGGCATAGTAATAAAAAAACAGTTGTTCTTGCTGTAGTTATAACTGCATTGGTGACATTTATAGCTGCAGCATTGCTCTTTTTATGCTGTACTCGGCATCGTAAGACTGGCCATTTCAGACTCAATGATGATAGGCCTCTTCTTAGCTTGAGCATGAGTGACTACTCTGTTGGTCCTTCCAGTTATTCGTTCGGAAATTCAATAAAAGGGGAGAAAGTTGAGTTTCAGTCATCAAGTAATGGTTTGGTGGACAATAAGAAGTATTCAGTGCAGGAAAGCCAATCAATAGGAGCTCTTAATGCTGCTGCTGGATCACCATTTGAACTGAAACCTCCTCCCGGGAGGGTGGGAGCCACAATCCTTTCTGGACTGCCTCCTTTAAAACCTCCTCCAGGCAGGCTAAACCCTCTTCCTCCTGAGCCACCTTCATTTAGACCTTCTGGTGATGCAGCTCCAGCTGCTGTTGCTGCTGTTGCTACAGCTCCTCCTCCTGCCCCTCAACAGCCTGGTTTGAGTAGCACTCTACCACCCCGACCACCAGCTGGTGCCAGACCTGGCCCACCTCTACCACTACCGCCAGCACTAGCTGGTGCGAGACCTGGTCCTCCTCCACCACCTCCAGCATCAGTTGGTGTGAAACCTGGTCCTCCTCCACCACCACCCACAGCACCAGCTGGTGCCAAACCTGGTCCTCCTCCTCCACCACCCCCAGCTGGTGCCAAACCTGGTCCTCGTCCACCACCACCTCCTATGAGTGGTGTGGCTCCTCCTCGACCTCCACCCTCGTTTGGCTCAAAGGTGCCGCGGCCGTTAGCTAGTGGATCAAAAGATACAGTTGTAGCTGGAGTAGAAGGTGAAGCTGATGCTCCCAAAGCCAAGCTAAAGCCCTTCTTCTGGGATAAGGTTCAAGCTAACCCGGATCAGTCAATGGTTTGGAATCAAATCAAATCAGGATCTTTCCAGTTTAATGAAGAGATGATAGAGACGCTTTTTGGCTATAATGCTGTGGATAAGAACAATGGTAAAAAACAGAAACAGTCTTCCTCCCAAGACCCTTCACCACTGTTTATCCAGATCATTGACAAAAAGAAAGCACAGAATTTATTGATTCTGTTGCGTGCATTGAATGTGACAATGGAAGAAGTTTGTGATGCACTTTATGAAGGACATGAGCTGCCCCCGGAATTCCTTCAAACCTTGCTGAAGATGGCACCAACATCGGATGAAGAACTTAAGCTTAGACTTTTTAGTGGTGATCTATCTCAACTTGGGCCTGCTGATCGTTTCCTGAAAGCCATGGTTGACATTCCATTTGCATTTAAGCGAATGGAAGTTCTCCTTTTCATGGGCTCACTTAAAGAGGATCTTGCAACTACTATGGAATCTTTTGCCATTTTAGAGGTTGCTTGTAAGGAACTAAGAAACAACCGGCTGTTCCTCAAGCTTCTTGAAGCCGTTCTCAAAACTGGCAACCGAATGAATGATGGAACTTTCCGTGGTGGTGCACAAGCATTTAAACTTGATACACTTCTGAAATTATCTGATGTAAAAGGAACAGATGGCAAGACTACACTCTTACATTTTGTTGTTCTAGAGATTATCCGCTCCGAGGGCATAAAAGCCATCAGAAAGGCAAAAGAGAGCCAGAAATCGTCTAGTATTAAATTGGATGACCTTCACGATAGTACCCGAGAAACAGAAGATCGCTACCATGAAATCGGTCTTCAGGTGGTTTCACGATTGAGCAGTGAACTTGAGAATGTAAAAAAAGCAGCAATTATAGATGCTGACAGCTTAACAGGAACTACTGCCAAACTTGGCCATGGTCTCATAAAAACACGAGACTTGGTAAACAAAAGCATGAAGAATGTGGAGGAAGATAGGGGGTTTTGTGAGACAGTGAAAAGTTTTGTGCAGAATGCTGAGGCTGATGTTATGAAACTGCTGGAAGAGGAGAAGAAAATCGTGGCTTTGGTGAAGAGCACTGGTGATTACTTCCATGGGAATTCTGGGAAGGATGAAGGCACCAGGTTGTTCATAGTAGTACGAGACTTCCTAATAATGGTGGATAAAGTATGCAACGAGGTGAGAGATACAAAGAAGAAGTCGGTTAAAACTCAAAAACAAGAGACTCCTCGAGAAGCATCTTCATCTGAACCACGTCCACCACCTGATTTTCGTCAGCGACTTTTTCCAGCGATTGCTGAAAGGAGGATGGATGACATTAGTTCAGACGATGAGAGTCCATAG
>Glyma06g41550.1 sequence type=predicted peptide gene model=Glyma06g41550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGIQKHMVNIKVTFGVLSVLLLVAAVSSIEKKEAENDFVRELLDPASGLLDEHTELSGSTNIISSEIQPIEQEEIQKFISSYCPQFLGNFLHCLRKNNHPLPVSGKEDDSKIWHVTYMGPLFSRSSDPERKFGRILLQHISEPPSPGPAVGSPTHSLAPSPESSLAPSSEPSLAPSSEPSLAPSPFAPAPLVHKPSHPLPPTSFFPKLTPPEEASEISSPSSDINKLEERHSNKKTVVLAVVITALVTFIAAALLFLCCTRHRKTGHFRLNDDRPLLSLSMSDYSVGPSSYSFGNSIKGEKVEFQSSSNGLVDNKKYSVQESQSIGALNAAAGSPFELKPPPGRVGATILSGLPPLKPPPGRLNPLPPEPPSFRPSGDAAPAAVAAVATAPPPAPQQPGLSSTLPPRPPAGARPGPPLPLPPALAGARPGPPPPPPASVGVKPGPPPPPPTAPAGAKPGPPPPPPPAGAKPGPRPPPPPMSGVAPPRPPPSFGSKVPRPLASGSKDTVVAGVEGEADAPKAKLKPFFWDKVQANPDQSMVWNQIKSGSFQFNEEMIETLFGYNAVDKNNGKKQKQSSSQDPSPLFIQIIDKKKAQNLLILLRALNVTMEEVCDALYEGHELPPEFLQTLLKMAPTSDEELKLRLFSGDLSQLGPADRFLKAMVDIPFAFKRMEVLLFMGSLKEDLATTMESFAILEVACKELRNNRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGTDGKTTLLHFVVLEIIRSEGIKAIRKAKESQKSSSIKLDDLHDSTRETEDRYHEIGLQVVSRLSSELENVKKAAIIDADSLTGTTAKLGHGLIKTRDLVNKSMKNVEEDRGFCETVKSFVQNAEADVMKLLEEEKKIVALVKSTGDYFHGNSGKDEGTRLFIVVRDFLIMVDKVCNEVRDTKKKSVKTQKQETPREASSSEPRPPPDFRQRLFPAIAERRMDDISSDDESP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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