Glyma06g41530 - SoyBase

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Report for Sequence Feature Glyma06g41530

Feature Type:	gene_model
Chromosome:	Gm06
Start:	44817723
stop:	44820579
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g41530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G54630	AT	Annotation by Michelle Graham. TAIR10: zinc finger protein-related \| chr5:22192607-22194260 REVERSE LENGTH=472	SoyBase	E_val: 0	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006417	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of translation	SoyBase	N/A	ISS
GO:0009657	GO-bp	Annotation by Michelle Graham. GO Biological Process: plastid organization	SoyBase	N/A	ISS
GO:0009965	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis	SoyBase	N/A	ISS
GO:0030154	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell differentiation	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
UniRef100_C6TA36	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TA36_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7JF39	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: C2H2 zinc finger protein n=1 Tax=Medicago truncatula RepID=G7JF39_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g41530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g41530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g265800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g41530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g41530

Limit To All Plant Sequences

>Glyma06g41530.1   sequence type=CDS   gene model=Glyma06g41530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAAGAAGAGAAAAAGAAGATAAAGGGAAACGTTAAGGATAACATGCCAACAGTGTGGTTCTCTCTGAAGAAGTCTTTACACTGCAAATCGGAGCCATCTGATGTACATGACCCCAAAACAAGGAAGCAGTTGAGCACAATCTTGACCAAGAGAGCAGGGAGGTCAGGGTGTTCAAGGTCCATAGCAAATCTCAAAGATGTAATCCATGGAAGCAAGAGGCATCTTGATAAGCCACCAAGTTGCAGTCCAAGATCCATAGGGAGCAGTGAGTTCCTCAACCCTATAACTCATGAAGTGATTCTGAGCAATTCAAGGTGTGAGCTGAAGATAACTGGCTATGGAGGATTCCAAGAAGGAGGGGTTGGAAGTGGTGGTGGTGGTAGCAATGCTGGTGGAGGTTCAACTTTTGTGGGGACTTTGAGGCCTGGTACCCCTGGCCCTGGAGGGCACCCTACAATGCACTACTTTAACCCTTCTTTTAGGACTTCTTCCACTCCTCCAAGGAAATCTCCTTTCCTTTCATCAGATAAAGAAGGGTCTGGTCCTCATGGTGCTGGACTTCATTCTAGCAATAGGTTGTCTCTTGAGACAGATTCTAATGGCTCTTCAACTGTGACTTGCCACAAATGTGGAGAGCAATTCAACAAATGGGATGCTGCTGAAGCTCATCATTTATCCAAGCATGCTGTGACTGAACTTGTGGAAGGAGATTCATCAAGGAAAATAGTGGAGATCATATGCAGGACTAGCTGGTTAAAGTCAGAAAACCAGTGTGGTAGAATTGAGAGAGTTTTGAAGGTTCACAACATGCAAAAGACTCTTGCAAGATTTGAGGAGTACAGGGAAATGGTGAAGATCAAAGCCAGCAAACTCCAGAAGAAGCATCCAAGATGTCTTGCCGATGGGAATGAACTTCTGAGGTTCTATGGCACCACTGTTTCATGCTCTCTTGGCCTCAATGGCTCTTCTAGTCTCTGCCTATCAGAAAAGTGTTGTGTTTGCAGAATCATAAGGAATGGTTTTTCAGCCAAGAAGGAGCTCAAGGGTGGAATTGGAGTCTTCACAACATCCACAAGTGGAAGGGCTTTTGAGTCCATAGATATCACTTGTGAGGAACCATCATTGAGAAAAGCACTTATAGTGTGCAGAGTAATTGCTGGCAGGGTTCATAGGCCACTTGAGAACATTCAAGAAATGGCAGCACAAACAGGATTTGACTCATTGGCTGGGAAAGTTGGTCTCTATTCAAACATTGAGGAGCTTTATTTGCTCAATCCTAGAGCTCTTCTTCCTTGCTTTGTGGTGATTTGCAAACCTTGA

Predicted protein sequences of Glyma06g41530

Limit To All Plant Sequences

>Glyma06g41530.1   sequence type=predicted peptide   gene model=Glyma06g41530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKEEKKKIKGNVKDNMPTVWFSLKKSLHCKSEPSDVHDPKTRKQLSTILTKRAGRSGCSRSIANLKDVIHGSKRHLDKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGYGGFQEGGVGSGGGGSNAGGGSTFVGTLRPGTPGPGGHPTMHYFNPSFRTSSTPPRKSPFLSSDKEGSGPHGAGLHSSNRLSLETDSNGSSTVTCHKCGEQFNKWDAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQCGRIERVLKVHNMQKTLARFEEYREMVKIKASKLQKKHPRCLADGNELLRFYGTTVSCSLGLNGSSSLCLSEKCCVCRIIRNGFSAKKELKGGIGVFTTSTSGRAFESIDITCEEPSLRKALIVCRVIAGRVHRPLENIQEMAAQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKP*

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