Glyma06g41520 - SoyBase

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Report for Sequence Feature Glyma06g41520

Feature Type:	gene_model
Chromosome:	Gm06
Start:	44808307
stop:	44813929
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g41520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G27250	AT	Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein \| chr4:13642803-13644425 REVERSE LENGTH=354	SoyBase	E_val: 1.00E-132	ISS
GO:0009062	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid catabolic process	SoyBase	N/A	ISS
GO:0009686	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellin biosynthetic process	SoyBase	N/A	ISS
GO:0009740	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0044237	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0045551	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cinnamyl-alcohol dehydrogenase activity	SoyBase	N/A	ISS
GO:0050662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: coenzyme binding	SoyBase	N/A	ISS
KOG1502	KOG	Flavonol reductase/cinnamoyl-CoA reductase	JGI		ISS
PTHR10366	Panther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	JGI		ISS
PTHR10366:SF9	Panther	NAD(P)H STEROID DEHYDROGENASE-RELATED	JGI		ISS
PF01370	PFAM	NAD dependent epimerase/dehydratase family	JGI		ISS
UniRef100_B9S9Z8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cinnamoyl-CoA reductase, putative n=1 Tax=Ricinus communis RepID=B9S9Z8_RICCO	SoyBase	E_val: 4.00E-159	ISS
UniRef100_I1KEE4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KEE4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g41520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g41520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g265700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g41520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g41520

Limit To All Plant Sequences

>Glyma06g41520.1   sequence type=CDS   gene model=Glyma06g41520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGGAAGTGCTGAAAATGGTGAAAAGCAATGAACAAGTTGTTCCTGGAGCCAAATATTGTGTCACAGGTTCCACAGGGTATATCGGTTCATGGCTAGTGGAGGCTCTTCTTGAAAGGGGATGCACGGTTCATGCCACTGTTAGAGATCCTGCAAAGTCATTGCACCTTCTGTCTCTGTGGAAGGGTGGTGACCAATTGAGATTTTTCCAAGCGGATTTGCATGAAGAAGGAAGCTTCGATGAGGCTGTAAAAGGATGCATTGGTGTGTTCCATGTTGCTGCTTCAATGGAATTCAATGTTAGGGACAAAGAAAACAATGAGGCTTTTGTTCAAGCAAATATAACTGACCCTGCAATCAAAGGAACCATAAACCTTCTAAAGTCTTGCTTGAAATCCAATTCTGTGAAAAGGGTTGTCTTCACATCTTCCATTAGTACCATTACTGCCAAAGACATCAACGGAAAGTGGAAATCTATTGTTGATGAATCTTGCCAAATCCACCCTGACACTGTATGGAACACACAAGCAAGTGGATGGGTTTATGCACTTTCAAAGCTTCTCACAGAAGAAGCAGCATTTCAATTTGCTAAAGAGAACGGCATTGATCTTGTGTCAGTCATATCAAGCACTGTTGCAGGCCCATTCTTCACTGCTAATGTACCAACAAGTGTTAAAGTTCTAGTGTCACCATTAACAGGTGAAACTGAGTACTTCAGGATATTATCTGCTGTAAATGCACGAATGGGATCAATTGCTTTAGTTCACATTGAAGATATATGCAGTGCTCACATATTCCTAATGGAGCATGCTAAAGCAGAAGGCCGATACATATGCAGCAGCCAAAGTTGTGCATTGTCTGACTTGGCTACCCTTATTTCCAAAGTGTATTCAAATTCAAATATCTACCAGAAGACCGAGAAAATTTATGACAAAGTTCCCTCTGAGATTTCATCAAAGAAGTTACAAGATTTGGGCTTTAGTTACAAGCATGACCTTGAAGATATAATTTATCAAACACTTATGTGTTGCCTAGACTATGGTTATTTACCTCCTGTTTAG

Predicted protein sequences of Glyma06g41520

Limit To All Plant Sequences

>Glyma06g41520.1   sequence type=predicted peptide   gene model=Glyma06g41520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQEVLKMVKSNEQVVPGAKYCVTGSTGYIGSWLVEALLERGCTVHATVRDPAKSLHLLSLWKGGDQLRFFQADLHEEGSFDEAVKGCIGVFHVAASMEFNVRDKENNEAFVQANITDPAIKGTINLLKSCLKSNSVKRVVFTSSISTITAKDINGKWKSIVDESCQIHPDTVWNTQASGWVYALSKLLTEEAAFQFAKENGIDLVSVISSTVAGPFFTANVPTSVKVLVSPLTGETEYFRILSAVNARMGSIALVHIEDICSAHIFLMEHAKAEGRYICSSQSCALSDLATLISKVYSNSNIYQKTEKIYDKVPSEISSKKLQDLGFSYKHDLEDIIYQTLMCCLDYGYLPPV*

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