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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma06g41490

Feature Type:gene_model
Chromosome:Gm06
Start:44765885
stop:44772109
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G01690AT Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein | chr2:309144-313499 REVERSE LENGTH=743 SoyBaseE_val: 9.00E-79ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
PTHR16023Panther TAX1 BINDING PROTEIN-RELATED JGI ISS
UniRef100_G7LAL0UniRef Annotation by Michelle Graham. Most informative UniRef hit: VAC14-like protein n=1 Tax=Medicago truncatula RepID=G7LAL0_MEDTR SoyBaseE_val: 3.00E-76ISS
UniRef100_I1KQB6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KQB6_SOYBN SoyBaseE_val: 7.00E-83ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g41490 not represented in the dataset

Glyma06g41490 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma06g41490.1   sequence type=CDS   gene model=Glyma06g41490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTAGTATTGAAGAATTCATACCACTGCTGAGGGAGCGCATGAATGTGTTGAATCCATATGTTCGTCAGTTTTTGGTAGGATGGATTACTGTATTGGATAGTGTCCCATATATTGATATGCTGGGGTTTCTTCCTGATTTTCTTGATGCCATTGTCCATTTTTTTATCTTTCCCCTAATCCATCTTTTAGGGTTGATATACCTCTGTGGCTCATTTTCAACTACTACTTTGACACAAAAGCAAAGTTTTTTGTTCATTTATCATTTTTTGACTCGAGCAGTGCTACTCTTGAAGTTTTTAGATTATGGTCGCATGGCTGAAATCCTGGTACAGAGGGCAGTTTCTCCAGATGAATTCACTAGGCTAACAGCTATCACATGGTTTGTCAAGCTTGGTGGAGACCAGCTTGTTCCATATTATGCTGACATTCTTGGAGCCATTTTGCCTTGTATAGCAGATAAAGAAGAGAAAATTAGAGTTGTTGCTCGTGAAACCAATGAAGAGCTACGTGCCCTCAAGGCAGATCCAGCTGAAGCGTTTGATGTAGGAGCAATCCTGTCCATTGCCAGGAGG

>Glyma06g41490.1   sequence type=predicted peptide   gene model=Glyma06g41490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPYIDMLGFLPDFLDAIVHFFIFPLIHLLGLIYLCGSFSTTTLTQKQSFLFIYHFLTRAVLLLKFLDYGRMAEILVQRAVSPDEFTRLTAITWFVKLGGDQLVPYYADILGAILPCIADKEEKIRVVARETNEELRALKADPAEAFDVGAILSIARR







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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