Glyma06g41318 - SoyBase

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Report for Sequence Feature Glyma06g41318

Feature Type:	gene_model
Chromosome:	Gm06
Start:	44597514
stop:	44599625
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g41318

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G27180	AT	Annotation by Michelle Graham. TAIR10: disease resistance protein (TIR-NBS-LRR class), putative \| chr1:9439859-9445818 FORWARD LENGTH=1556	SoyBase	E_val: 3.00E-53	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0043531	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ADP binding	SoyBase	N/A	ISS
PTHR23155	Panther	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	JGI		ISS
PTHR23155:SF300	Panther		JGI		ISS
PF01582	PFAM	TIR domain	JGI		ISS
UniRef100_G7KHR1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tir-nbs-lrr resistance protein n=1 Tax=Medicago truncatula RepID=G7KHR1_MEDTR	SoyBase	E_val: 9.00E-91	ISS
UniRef100_I1KED6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KED6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g41318

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g41318 not represented in the dataset	Glyma06g41318 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g41318 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g264100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g41318

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g41318

Limit To All Plant Sequences

>Glyma06g41318.1   sequence type=CDS   gene model=Glyma06g41318   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGATATACGACGTGTTTGTGAGCTTCTGCAGTGAAGACACTGGCAACAACTTCACTGGTTTTCTTTTTCAAGCTCTCCATCTACATGGCATTCAGACCAACAACGATGATGCAGATCTCAGGAAAGCCGAATCCATACCCATAGAAGAGTCTCGCCTTTTCATCGTGGTCTTCTCTAAGAACTATGCTTCCTCAACTTTGTGCTTGCAGGAACTGGCAAAGATCTGCAATTGCATTGAAGCATCATCAAGACGTGTTCTGCCTATTTTTTATGATGTTGATCCTTCACATGTGCGAAAGCAGAGTGGATTTTATGATGAAGCCTTATCCCAACATGAAAAAAGGTTTCAAGAAGATAAAGTGAAGATGGAAGAAGTGCAAAAATGGAGAAAAGATCTCGAAAGTGTGGCCGGTATCATTGGTTCGGATATCCGAAATAAATTGAAAATATTGTACGAGAGGCATGTGGTATACTGCGTATCAAATTTTCAAGTCATCCAAATGATGAACTATTTCGGTTCTCTCAAATGTTCAGTCAGCTCTTCTTCATCTGACGCCATAAAGAAATATGATGTGTTTGTGAGCTTCCGCGGTGAAGACACAGGCAACAACTTTACTGCTTTTCTTTTACAAGCTCTCCGTAGAAAAGGCATTAATGCCTTCAAAGATGATGAAAATCTCAAGAAAGGTGAATTCATAGAACCCGAGCTGCGGGAAGCTATTGAAGGGTCTCGAATTTTCATTGTGGTCTTCTCAAAGAACTATGCTTCCTCTAATTGGTGTTTGGGTGAACTTGCACACATCTGCTACTGTATTGAAACATCACGAAGACCAGTTCTGCCTATTTTTTATGATGTTGATCCATTGGAGGTGCGTAAACAGAGTGGATGTTATGAGAAAGCATTTGTGGAACATGAAGAAAGATTCGTAGAAGATAGCAAGAAGATGAAAGAAGTTCATAGATGGAGAGAAGCTCTGAAACAAGTGGCTAATTTCAAAAGTGGTTGGGATATCAGAAATAAGGCACTATACGCAGAGATTGAACAAATTGTCGAAACAATAAATTATGAATTGGATTCCAAAAGTTGCCCAAATGATGATATAGATGGAGTCTCCCAAATTTTTAGCTCTTTTTCATCTCCCACGAGACCGACATATGACGTGTTTGTGAGCTTCTGCGGTGTAGACACACCCAACAACTTCACTGCTTTTCTCTTTGATGCTCTCTCTCAAAATGGCATTCATGCCTTCAAAGATGATACACATCTTCAGAAAGGCGAATCCATAGCACCCAAGCTGCTACAGGCCATTCATGGGTCTCGCCTTTTCGTTGTGGTCTTCTCTAAGAACTCTGCTTCCTCAACTTGGCGCTTGCGTGAACTTGCACACATCTGCAACTGCACTGATGAAGCATCCCCAAGTCGTGTTATTCCAATTTTCTATGATGTTGATCCATCGGAGGTGCGGAAACAGAGTGGTTATTATGGGATAGCCTTCGCAAAACACGAAGAATGA

Predicted protein sequences of Glyma06g41318

Limit To All Plant Sequences

>Glyma06g41318.1   sequence type=predicted peptide   gene model=Glyma06g41318   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVIYDVFVSFCSEDTGNNFTGFLFQALHLHGIQTNNDDADLRKAESIPIEESRLFIVVFSKNYASSTLCLQELAKICNCIEASSRRVLPIFYDVDPSHVRKQSGFYDEALSQHEKRFQEDKVKMEEVQKWRKDLESVAGIIGSDIRNKLKILYERHVVYCVSNFQVIQMMNYFGSLKCSVSSSSSDAIKKYDVFVSFRGEDTGNNFTAFLLQALRRKGINAFKDDENLKKGEFIEPELREAIEGSRIFIVVFSKNYASSNWCLGELAHICYCIETSRRPVLPIFYDVDPLEVRKQSGCYEKAFVEHEERFVEDSKKMKEVHRWREALKQVANFKSGWDIRNKALYAEIEQIVETINYELDSKSCPNDDIDGVSQIFSSFSSPTRPTYDVFVSFCGVDTPNNFTAFLFDALSQNGIHAFKDDTHLQKGESIAPKLLQAIHGSRLFVVVFSKNSASSTWRLRELAHICNCTDEASPSRVIPIFYDVDPSEVRKQSGYYGIAFAKHEE*

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