|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT5G54580 | AT | Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:22171332-22172656 FORWARD LENGTH=156 | SoyBase | E_val: 1.00E-54 | ISS |
GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
KOG0114 | KOG | Predicted RNA-binding protein (RRM superfamily) | JGI | ISS | |
PTHR24012 | Panther | FAMILY NOT NAMED | JGI | ISS | |
PTHR24012:SF32 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
UniRef100_D7MUB5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RNA recognition motif-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MUB5_ARALL | SoyBase | E_val: 1.00E-52 | ISS |
UniRef100_I1KED0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KED0_SOYBN | SoyBase | E_val: 1.00E-100 | ISS |
Glyma06g41210 not represented in the dataset |
Glyma06g41210 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.06g263200 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g41210.1 sequence type=CDS gene model=Glyma06g41210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGACGAGAGCAGCAGTGGCGGCGCCGCGCGTTTTGCGGCGGTTTTTCTGCACAAACTCAGCCTCTTCTTCTTTCCCCTTCGTTTCTACGCTGCCTCCCGGTGCCACCCCCGCCCCAACCCGACCCACGGCGGAGCCCAACACCAACCTCTTCGTCTCTGGTCTTAGTAAACGTACTAATACAGAAAGGCTTCGAGAGGAGTTTGCAAAGTTCGGTGAAGTTGTTCATGCGAGGGTGGTAACTGATCGAGTCTCAGGTTACTCTAAGGGGTTTGGTTTTGTTCAATATGCTACAATAGAAGATGCTGCAAAGGGCATTGAAGGCATGGATGGCAAGTTTTTGGACGGTTGGGTTATATTTGCAGAGTATGCGAGACCAAGACCACCACCAGGCCAACCTCTAAATAGCAACAGTTCTCAGTATGGCCGGCAGTGA
>Glyma06g41210.1 sequence type=predicted peptide gene model=Glyma06g41210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATRAAVAAPRVLRRFFCTNSASSSFPFVSTLPPGATPAPTRPTAEPNTNLFVSGLSKRTNTERLREEFAKFGEVVHARVVTDRVSGYSKGFGFVQYATIEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPGQPLNSNSSQYGRQ*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||