Glyma06g41200 - SoyBase

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Report for Sequence Feature Glyma06g41200

Feature Type:	gene_model
Chromosome:	Gm06
Start:	44481719
stop:	44487785
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g41200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G54570	AT	Annotation by Michelle Graham. TAIR10: beta glucosidase 41 \| chr5:22167636-22170235 REVERSE LENGTH=535	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
KOG0626	KOG	Beta-glucosidase, lactase phlorizinhydrolase, and related proteins	JGI		ISS
PTHR10353	Panther	GLYCOSIDE HYDROLASES	JGI		ISS
PF00232	PFAM	Glycosyl hydrolase family 1	JGI		ISS
UniRef100_B9SY45	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Beta-glucosidase, putative n=1 Tax=Ricinus communis RepID=B9SY45_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KEC9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KEC9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g41200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g41200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g263100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g41200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g41200

Limit To All Plant Sequences

>Glyma06g41200.2   sequence type=transcript   gene model=Glyma06g41200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGAAAAAAAGAAGATAATTATTACCTAATTCAGTGGAGAAGTATAAAAAGGGTAAGGCACCCCACAAGGTGGCATTTAGAAAACAACACAAAACAATCTCTTCCCCGCAATTGTAACCTCTTATTGACGCAGACTGCACCCCCATTCCCTGATGTTCAAGTTTTCTCATCATCTGAATACACCCTTTTCAATCTTCATCTCTCTTCACACACATACATCAAACACTTCTATCAACAACAACAAAAGAGTGTGAGATGTTGTAAATTCTCTAATATGTGTCTTTGATTTTTACATATAAAAAAAACAACACACACTTCTACCAAATTTTGCTCTAAAAAAATTAAGTAAAATATCTTGCTTATCAAATGTGCCATGTCATCCCAATTCCCTAGTGGTTTTATCTGTCTTTGATTGATGAGAATATATATATATATAGTCCCTCAAAGAAGTTGAATAACAAGAACAAAAAATGGGAATTTATATCTCACATATGCTAGTTTCCAAGGAAACTCGCCCTCTTTAGTCTATTTCTTCTTCAGCCATAGCCTTCACCTTTACAGCAAAGATAGCTACATTTTTGCTGTATATAAATAAAAGCAAAGCAATACAGTCTCTAACCACAAAAAACTCACTAACCATCTACAGAAAACTTTTCATCATCAACCATTATGAGGATTACTATTATTTCTATTACTCTTTTCCTCATAATGACCAAACTCCTTGTGGGGGCAGAATCAATAAGCAGAGCAGATTTTCCAGAAGGGTTTGTCTTTGGAACTGCTTCTTCAGCTCACCAGTTTGAGGGAGCTACTGATGAAGGAAACAAAGGAGATAGCATATGGGATACTTTCTCAAGAATACCAGGGAGAATTGTGGACTTCAGCAATGCAGACAAGGCAGTGGATCAATACCACCGATTTCAGAATGATATAAACTTGATGAAGGATTTGGGAATGGATTCTTACAGATTTTCCATATCATGGCCGAGAATTTTTCCAAATGGAACAGGGGAACCCAATAAAGAGGGAATAAAATATTACAACAGCCTCATTGATTCTTTACTTGTAAAAGGAATCCAGCCTTTTGTAACACTATATCATTGGGATCTTCCACAGATGCTAGAAGATAAATATGAAGGATGGTTAAGCTCACAAATCATAAAAGATTATGAGCATTATGCCAATACATGCTTCAAAGCTTTTGGAGACAGAGTTAAGCACTGGATTACCTTCAATGAGCCTCATAACTTTGCACTCCATGGTTATGATTTAGGCATTCAAGCACCAGGAAGATGTTCCCTTTTGGGTCATCTTCTATGTAAGAAAGGAAAATCATCCACTGAGCCATACATTGTTGCTCATAACATTCTCTTGTCACATGCTGCTGCCTATAGAAGCTACCAACTACATTTCAAGGAACAACAAGGAGGTCAAATAGGAATAGCACTAGATGTCATTTGGTATGAACCTATAACAGAACTTGATGAAGACAAAGACGCAGCAGCAAGAGCTATGGACTTTTCACTTGGATGGTTCCTTGACCCACTTTTCTTTGGAAAATATCCTCTCTCAATGGAGAAACTTGTAGCTAAGAGATTGCCGGAGATTTCTGATACAGCCTCAAAATTTCTTGTGGGATCTTTGGATTTTATTGGCATAAATCACTACACCTCAGTCTATACTCGTAACGACAGGACTCGGATTCGTAAACTAGTTATGCAAGATGCTGCTACTGATGCTGCTGTCATTACAACCGCATACCGAAGAGGATCTGCAATTGGAGAAAAGCTTCAAGTTGGCTGCACATTGTTCCATGGGGCATCCGAAAGTTGGTAAAACATGTGAAAGACAAATATGGGGACACGCCAGTAATTATAACGGAGAATGGAATGGATGACCCAAGTGGACCCTTTAGGACCTTAGAAAAGGCCTTGAATGATGACAAGAGGATAAGATACCATAGAGACTATCTCTCAAACCTATCTGCTGCTATAAGGGAAGATGGTTGCAATGTACGTGGTTACTTTGTATGGTCATTGCTTGACAATTGGGAGTGGAACATGGGATACACCGTACGGTTTGGACTCTACTATGTGGATTTCAGGAACAATCTTACTAGGATACCAAAAGATTCGGTGCAATGGTTCAAAAACATGCTCAGAATAGAGACAGAACATAGTGAAATTTGAATTGCTTTATCATACATCAAATTCATTTTGTAATTGTATAGTTCTTTGAAAATTAATGAAGGAAGTGGCATCTAAAAAGGAGTGAAAAATGTTAATGAAGCCAACAACTGAGAAGGAAGAGAGAAGGAGGATAACGTGTCATTCCTATCTTTCATCTCAACTCCATGAGAAATTATTAGGTAGCTTCAGACCATCATGTGTTCATGATTCTTGCCAGTTTCTATCTGAATTTGAGAGTATTCAAAATTTTTCAAGTATCAGAAAAATTAACAATTGACCATGTATTATTCGAAGATTGGTGAGGATCATATATGTTAGTCCAAAACTACCTAATAATTTCTCAAAGTTGAGGGTCATTGAGATGGTACTAGCCCATGCCTGATACTCCAAGTGACAAGATGCTTTGATTTCCTTATATTTTTTGTTCAAGTCTTGTGTACGTAGAACATAAGCATTGATTCCATGGTTCAAGTCCATGTATTGGTTCAATAGGCAGATAATGACCGATAGAAAGTGAACCTATGATTATCTCAGGCTTATTTGAATATGTTTCTAATTGATTCAAAGATGAATGAAATATAATTGTCTAAGGTTGAGTTCACTAATTAACCATGTATTTGTTCATTATTTTGAACTGAA

Coding sequences of Glyma06g41200

Limit To All Plant Sequences

>Glyma06g41200.1   sequence type=CDS   gene model=Glyma06g41200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGATTACTATTATTTCTATTACTCTTTTCCTCATAATGACCAAACTCCTTGTGGGGGCAGAATCAATAAGCAGAGCAGATTTTCCAGAAGGGTTTGTCTTTGGAACTGCTTCTTCAGCTCACCAGTTTGAGGGAGCTACTGATGAAGGAAACAAAGGAGATAGCATATGGGATACTTTCTCAAGAATACCAGGGAGAATTGTGGACTTCAGCAATGCAGACAAGGCAGTGGATCAATACCACCGATTTCAGAATGATATAAACTTGATGAAGGATTTGGGAATGGATTCTTACAGATTTTCCATATCATGGCCGAGAATTTTTCCAAATGGAACAGGGGAACCCAATAAAGAGGGAATAAAATATTACAACAGCCTCATTGATTCTTTACTTGTAAAAGGAATCCAGCCTTTTGTAACACTATATCATTGGGATCTTCCACAGATGCTAGAAGATAAATATGAAGGATGGTTAAGCTCACAAATCATAAAAGATTATGAGCATTATGCCAATACATGCTTCAAAGCTTTTGGAGACAGAGTTAAGCACTGGATTACCTTCAATGAGCCTCATAACTTTGCACTCCATGGTTATGATTTAGGCATTCAAGCACCAGGAAGATGTTCCCTTTTGGGTCATCTTCTATGTAAGAAAGGAAAATCATCCACTGAGCCATACATTGTTGCTCATAACATTCTCTTGTCACATGCTGCTGCCTATAGAAGCTACCAACTACATTTCAAGGAACAACAAGGAGGTCAAATAGGAATAGCACTAGATGTCATTTGGTATGAACCTATAACAGAACTTGATGAAGACAAAGACGCAGCAGCAAGAGCTATGGACTTTTCACTTGGATGGTTCCTTGACCCACTTTTCTTTGGAAAATATCCTCTCTCAATGGAGAAACTTGTAGCTAAGAGATTGCCGGAGATTTCTGATACAGCCTCAAAATTTCTTGTGGGATCTTTGGATTTTATTGGCATAAATCACTACACCTCAGTCTATACTCGTAACGACAGGACTCGGATTCGTAAACTAGTTATGCAAGATGCTGCTACTGATGCTGCTGTCATTACAACCGCATACCGAAGAGGATCTGCAATTGGAGAAAAGGCAGCTTCAAGTTGGCTGCACATTGTTCCATGGGGCATCCGAAAGTTGGTAAAACATGTGAAAGACAAATATGGGGACACGCCAGTAATTATAACGGAGAATGGAATGGATGACCCAAGTGGACCCTTTAGGACCTTAGAAAAGGCCTTGAATGATGACAAGAGGATAAGATACCATAGAGACTATCTCTCAAACCTATCTGCTGCTATAAGGGAAGATGGTTGCAATGTACGTGGTTACTTTGTATGGTCATTGCTTGACAATTGGGAGTGGAACATGGGATACACCGTACGGTTTGGACTCTACTATGTGGATTTCAGGAACAATCTTACTAGGATACCAAAAGATTCGGTGCAATGGTTCAAAAACATGCTCAGAATAGAGACAGAACATAGTGAAATTTGA

>Glyma06g41200.2   sequence type=CDS   gene model=Glyma06g41200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGATTACTATTATTTCTATTACTCTTTTCCTCATAATGACCAAACTCCTTGTGGGGGCAGAATCAATAAGCAGAGCAGATTTTCCAGAAGGGTTTGTCTTTGGAACTGCTTCTTCAGCTCACCAGTTTGAGGGAGCTACTGATGAAGGAAACAAAGGAGATAGCATATGGGATACTTTCTCAAGAATACCAGGGAGAATTGTGGACTTCAGCAATGCAGACAAGGCAGTGGATCAATACCACCGATTTCAGAATGATATAAACTTGATGAAGGATTTGGGAATGGATTCTTACAGATTTTCCATATCATGGCCGAGAATTTTTCCAAATGGAACAGGGGAACCCAATAAAGAGGGAATAAAATATTACAACAGCCTCATTGATTCTTTACTTGTAAAAGGAATCCAGCCTTTTGTAACACTATATCATTGGGATCTTCCACAGATGCTAGAAGATAAATATGAAGGATGGTTAAGCTCACAAATCATAAAAGATTATGAGCATTATGCCAATACATGCTTCAAAGCTTTTGGAGACAGAGTTAAGCACTGGATTACCTTCAATGAGCCTCATAACTTTGCACTCCATGGTTATGATTTAGGCATTCAAGCACCAGGAAGATGTTCCCTTTTGGGTCATCTTCTATGTAAGAAAGGAAAATCATCCACTGAGCCATACATTGTTGCTCATAACATTCTCTTGTCACATGCTGCTGCCTATAGAAGCTACCAACTACATTTCAAGGAACAACAAGGAGGTCAAATAGGAATAGCACTAGATGTCATTTGGTATGAACCTATAACAGAACTTGATGAAGACAAAGACGCAGCAGCAAGAGCTATGGACTTTTCACTTGGATGGTTCCTTGACCCACTTTTCTTTGGAAAATATCCTCTCTCAATGGAGAAACTTGTAGCTAAGAGATTGCCGGAGATTTCTGATACAGCCTCAAAATTTCTTGTGGGATCTTTGGATTTTATTGGCATAAATCACTACACCTCAGTCTATACTCGTAACGACAGGACTCGGATTCGTAAACTAGTTATGCAAGATGCTGCTACTGATGCTGCTGTCATTACAACCGCATACCGAAGAGGATCTGCAATTGGAGAAAAGCTTCAAGTTGGCTGCACATTGTTCCATGGGGCATCCGAAAGTTGGTAA

Predicted protein sequences of Glyma06g41200

Limit To All Plant Sequences

>Glyma06g41200.1   sequence type=predicted peptide   gene model=Glyma06g41200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRITIISITLFLIMTKLLVGAESISRADFPEGFVFGTASSAHQFEGATDEGNKGDSIWDTFSRIPGRIVDFSNADKAVDQYHRFQNDINLMKDLGMDSYRFSISWPRIFPNGTGEPNKEGIKYYNSLIDSLLVKGIQPFVTLYHWDLPQMLEDKYEGWLSSQIIKDYEHYANTCFKAFGDRVKHWITFNEPHNFALHGYDLGIQAPGRCSLLGHLLCKKGKSSTEPYIVAHNILLSHAAAYRSYQLHFKEQQGGQIGIALDVIWYEPITELDEDKDAAARAMDFSLGWFLDPLFFGKYPLSMEKLVAKRLPEISDTASKFLVGSLDFIGINHYTSVYTRNDRTRIRKLVMQDAATDAAVITTAYRRGSAIGEKAASSWLHIVPWGIRKLVKHVKDKYGDTPVIITENGMDDPSGPFRTLEKALNDDKRIRYHRDYLSNLSAAIREDGCNVRGYFVWSLLDNWEWNMGYTVRFGLYYVDFRNNLTRIPKDSVQWFKNMLRIETEHSEI*

>Glyma06g41200.2   sequence type=predicted peptide   gene model=Glyma06g41200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRITIISITLFLIMTKLLVGAESISRADFPEGFVFGTASSAHQFEGATDEGNKGDSIWDTFSRIPGRIVDFSNADKAVDQYHRFQNDINLMKDLGMDSYRFSISWPRIFPNGTGEPNKEGIKYYNSLIDSLLVKGIQPFVTLYHWDLPQMLEDKYEGWLSSQIIKDYEHYANTCFKAFGDRVKHWITFNEPHNFALHGYDLGIQAPGRCSLLGHLLCKKGKSSTEPYIVAHNILLSHAAAYRSYQLHFKEQQGGQIGIALDVIWYEPITELDEDKDAAARAMDFSLGWFLDPLFFGKYPLSMEKLVAKRLPEISDTASKFLVGSLDFIGINHYTSVYTRNDRTRIRKLVMQDAATDAAVITTAYRRGSAIGEKLQVGCTLFHGASESW*

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