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Report for Sequence Feature Glyma06g41190

Feature Type:gene_model
Chromosome:Gm06
Start:44473787
stop:44479667
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g41190
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G20650AT Annotation by Michelle Graham. TAIR10: mRNA capping enzyme family protein | chr3:7221168-7223939 REVERSE LENGTH=370 SoyBaseE_val: 0ISS
GO:0006370GO-bp Annotation by Michelle Graham. GO Biological Process: 7-methylguanosine mRNA capping SoyBaseN/AISS
GO:0015824GO-bp Annotation by Michelle Graham. GO Biological Process: proline transport SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004482GO-mf Annotation by Michelle Graham. GO Molecular Function: mRNA (guanine-N7-)-methyltransferase activity SoyBaseN/AISS
KOG1975 KOG mRNA cap methyltransferase JGI ISS
PTHR12189Panther MRNA (GUANINE-7-)METHYLTRANSFERASE JGI ISS
PF03291PFAM mRNA capping enzyme JGI ISS
UniRef100_I1KEC8UniRef Annotation by Michelle Graham. Most informative UniRef hit: mRNA cap guanine-N7 methyltransferase n=1 Tax=Glycine max RepID=I1KEC8_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1KEC8UniRef Annotation by Michelle Graham. Best UniRef hit: mRNA cap guanine-N7 methyltransferase n=1 Tax=Glycine max RepID=I1KEC8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g41190
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g41190 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g263000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g41190
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g41190
>Glyma06g41190.1   sequence type=CDS   gene model=Glyma06g41190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAACGAGGGTACCAGGAATCCCCTTCAAGCTCGTTAGGTCCACCTCATTCCAGAGCTAGACATGATCCTCAAGGTGGTGCACACTTTGTTGAGGATGAAAGCACAAAGATTTTTGCTCGGAAAGTAGCAGATCATTATAGTGCGAGATCCAACCAGACTTTGGAAGAACGGGAGGCTAGTCCGATAATTCATTTGAAGAAACTCAATAATTGGATTAAAAGCGTCTTAATTCAGCTTTATGCTCGTCGAGGAGATGCAGTACTTGACCTCGCCTGTGGCAAGGGTGGTGATCTTATCAAATGGGACAAGGCCAAAATTGGATATTATGTTGGTATTGACATTGCTGAAGGCTCGATCAAGGACTGCCGGACACGTTACAACGGTGATGCTGACCATCATCAGCGACGTAAAAAGTTTACATTTCCTGCTCGCCTTATATGTGGAGATTGTTATGAGGTTCGCTTGGACAAAGTTCTTGCAGATGATGCTCCTTTTGATATTTGTAGCTGCCAGTTTGCATTGCATTACTCATGGTCTACGGAGGCCCGTGCCCGGCAAGCATTGGCTAATGTGTCAGCTTTACTTCGCCCAGGAGGCATTTTCATTGGAACAATGCCTGATGCCAATGTGATAATCAAGAAGCTTAGAGAAGCTGAAGGATTAACTTTTGGCAACAGAGTCTATTGGGTGCGTTTTGATGAAGAATTTTCTGATAAGAAATTTAAATCTTCCAGCCCTTTTGGAATAAAGTACACGTTCCATTTGGAGGACGCTGTTGATTGTCCTGAATGGATTGTCCCCTTCCATGTATTCAAGTCATTAGCTGAAGAGAATGACTTTGAGCTTGTTTTCGCAAAGAACTCACATGAATTTGTGCATGAGTATATGAAAAAACCGGAATTTGTGGAGCTCATGCGAAGACTTGGTGCATTGGGAGATGGCAACCAAGATCAAAGTACACTCTCTGCTGATGAATGGGAGGCAGCATATTTATACATGTCATTTGTATTGAGAAAGCGAGGTCAACCTGACAAAACCCAACAGAGTGGCAGAAGGAACCGAGGGTCAATGCACATTTCAGAGGAAGACATCATGTACATTAGCACTGATGATTAA
Predicted protein sequences of Glyma06g41190
>Glyma06g41190.1   sequence type=predicted peptide   gene model=Glyma06g41190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKRGYQESPSSSLGPPHSRARHDPQGGAHFVEDESTKIFARKVADHYSARSNQTLEEREASPIIHLKKLNNWIKSVLIQLYARRGDAVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIKDCRTRYNGDADHHQRRKKFTFPARLICGDCYEVRLDKVLADDAPFDICSCQFALHYSWSTEARARQALANVSALLRPGGIFIGTMPDANVIIKKLREAEGLTFGNRVYWVRFDEEFSDKKFKSSSPFGIKYTFHLEDAVDCPEWIVPFHVFKSLAEENDFELVFAKNSHEFVHEYMKKPEFVELMRRLGALGDGNQDQSTLSADEWEAAYLYMSFVLRKRGQPDKTQQSGRRNRGSMHISEEDIMYISTDD*






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