Glyma06g40860 - SoyBase

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Report for Sequence Feature Glyma06g40860

Feature Type:	gene_model
Chromosome:	Gm06
Start:	44086613
stop:	44089781
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g40860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G54510	AT	Annotation by Michelle Graham. TAIR10: Auxin-responsive GH3 family protein \| chr5:22131321-22133564 REVERSE LENGTH=612	SoyBase	E_val: 0	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009734	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin mediated signaling pathway	SoyBase	N/A	ISS
GO:0009826	GO-bp	Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth	SoyBase	N/A	ISS
GO:0010252	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin homeostasis	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0010279	GO-mf	Annotation by Michelle Graham. GO Molecular Function: indole-3-acetic acid amido synthetase activity	SoyBase	N/A	ISS
PF03321	PFAM	GH3 auxin-responsive promoter	JGI		ISS
UniRef100_B9T670	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Indole-3-acetic acid-amido synthetase GH3.6, putative n=1 Tax=Ricinus communis RepID=B9T670_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KEA6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KEA6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g40860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g40860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g260800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g40860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g40860

Limit To All Plant Sequences

>Glyma06g40860.1   sequence type=CDS   gene model=Glyma06g40860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTGAGGCACCGAGAGACTACAACCTTTTGGAGCAAAACAAGAAAACCCTCGAGTTCATTGAGGATGTCACTGCCAACGCAGACCAAGTTCAGAAGAGGGTCCTCTCCGAAATCCTCTCCAACAATGCAAACGCTGAGTACCTCAAGAGACACGGCCTCCATGGCCAAACCGACCGCGAAACCTTCAAGAAACTCTTGCCTGTCATAACCTACGAGGACATCCAACCCGACATCAACCGCATCGCCAATGGCGATACTTCTCCAATCCTTTGCTCCAAACCCATTTCAGAATTCCTCACTAGTTCTGGGACATCAGGAGGTGAGAGGAAGCTGATGCCAACAATTGAAGAAGAGCTAGGTAGAAGGAGTTTGCTGTATAGCCTTCTGATGCCAGTGATGAGCCAGTTTGTTCCTGGTTTAGAAAAGGGCAAAGGAATGTACCTAATGTTCATAAAATCCGAGGCCAAAACCCCCGGTGGAATTGTGGCTCGTCCAGTTCTCACCAGCTACTACAAAAGCTCATACTTCAAAGACAGACCCTACGACCCTTACACCAACTACACCAGCCCCAACGAGACCGTCCTCTGCCTGGACTCCTACCAGAGCATGTACTCCCAACTCCTCTGCGGCCTTTGCCAGCACAAGGAGGTCCTCCGTGTCGGCGCCGTCTTCGCCTCCGGCTTCATAAGGGCCATCCGCTTCCTCGAGAAGCATTGGCCCTTACTTTGCCATGATATCCGAACGGGTACCATTGACAATACGGTCACGGACCTGTCGGTCCGTGACGCTGTGATGAAGATCCTCAAGCCTGATGCCAGGCTTGCGGATCTCATCCAGTGTGAGTGTGGGAAGAGCTCCTGGCAGGGAATCATCACCAGGCTGTGGCCCAACACTAAGTATGTGGATGTGATTGTGACTGGGACAATGTCACAGTACATCCCCACGTTGGACTACTACAGCAATGGACTCCCACTTGTGTGCACCATGTATGCGTCTAGTGAGTGCTACTTTGGTGTCAATCTTAACCCTCTTTGCAAACCTAGTGAGGTCTCTTACACCCTCATTCCCACCATGTGCTACTTCGAGTTCTTGCCTGTTAATAGAAGCAATGGGGTGTCCCATGACAATCTCCACACCCCTAGATCCCTCAATGAGAAGGAACAGAAGGAGCTCGTTGAGCTTGTTGATGTCAAACTTGGCCAAGAATATGAACTTGTGGTCACAACTTATGCTGGTTTGTATCGTTACAGAGTTGGTGATGTGCTGAGGGTGGCTGGATTCAAGAACAAGGCACCCCAATTCAACTTTGTGTGCAGAAAGAACGTGGTGTTGAGCATAGACTCAGACAAGACCGATGAGGTTGAGCTCCAGAACGCAATGAAGAATGCCGTGACACACTTGGTGCCCTTTGATGCATCAGTGTCCGAGTACACCAGCTATGCAGACACCACAACAATCCCTGGCCACTATGTCTTGTACTGGGAACTCTCCCTGAAAGGCTCAACCCCAATTCCACCATGTGTTTTTGAGGATTGTTGCTTAACCATAGAGGAATCACTGAACAGTGTGTATCGCCAAGGTCGAGTTTCGGACAAATCGATCGGGCCACTTGAGATCAAGATTGTGGAACAGGGGACTTTTGATAAGCTCATGGACTATGCCATAAGCTTAGGGGCTTCAATAAATCAGTACAAGACTCCAAGGTGTGTGAAGTTTGCACCTGTGCTGGAGCTCTTGAACTCAAGGGTGGTGGAGAAGTATTTTAGTCCAAAATGTCCAAAATGGGTTCCGGGACACAAGCAGTGGATCAACCAGAATTCATCATGA

Predicted protein sequences of Glyma06g40860

Limit To All Plant Sequences

>Glyma06g40860.1   sequence type=predicted peptide   gene model=Glyma06g40860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPEAPRDYNLLEQNKKTLEFIEDVTANADQVQKRVLSEILSNNANAEYLKRHGLHGQTDRETFKKLLPVITYEDIQPDINRIANGDTSPILCSKPISEFLTSSGTSGGERKLMPTIEEELGRRSLLYSLLMPVMSQFVPGLEKGKGMYLMFIKSEAKTPGGIVARPVLTSYYKSSYFKDRPYDPYTNYTSPNETVLCLDSYQSMYSQLLCGLCQHKEVLRVGAVFASGFIRAIRFLEKHWPLLCHDIRTGTIDNTVTDLSVRDAVMKILKPDARLADLIQCECGKSSWQGIITRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSYTLIPTMCYFEFLPVNRSNGVSHDNLHTPRSLNEKEQKELVELVDVKLGQEYELVVTTYAGLYRYRVGDVLRVAGFKNKAPQFNFVCRKNVVLSIDSDKTDEVELQNAMKNAVTHLVPFDASVSEYTSYADTTTIPGHYVLYWELSLKGSTPIPPCVFEDCCLTIEESLNSVYRQGRVSDKSIGPLEIKIVEQGTFDKLMDYAISLGASINQYKTPRCVKFAPVLELLNSRVVEKYFSPKCPKWVPGHKQWINQNSS*

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