Report for Sequence Feature Glyma06g40820
Feature Type: gene_model
Chromosome: Gm06
Start: 44001679
stop: 44004225
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g40820
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G72890 AT
Annotation by Michelle Graham. TAIR10: Disease resistance protein (TIR-NBS class) | chr1:27429947-27431717 FORWARD LENGTH=438
SoyBase E_val: 2.00E-53 ISS
GO:0006914 GO-bp
Annotation by Michelle Graham. GO Biological Process: autophagy
SoyBase N/A ISS
GO:0006952 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response
SoyBase N/A ISS
GO:0007165 GO-bp
Annotation by Michelle Graham. GO Biological Process: signal transduction
SoyBase N/A ISS
GO:0005622 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: intracellular
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0043531 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ADP binding
SoyBase N/A ISS
PTHR11017 Panther
LEUCINE RICH REPEAT PROTEIN
JGI ISS
PTHR11017:SF20 Panther
DISEASE RESISTANCE PROTEIN
JGI ISS
PF01582 PFAM
TIR domain
JGI ISS
UniRef100_G7JF25 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: NBS-LRR resistance-like protein 4F n=1 Tax=Medicago truncatula RepID=G7JF25_MEDTR
SoyBase E_val: 3.00E-142 ISS
UniRef100_I1KEA3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KEA3_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g40820
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma06g40820 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g260500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g40820
Coding sequences of Glyma06g40820
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g40820.2 sequence type=CDS gene model=Glyma06g40820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGGACATATGATGTATTTGTGAGCTTCCGCAGTGAAGACACACGCAACAACTTCACTGGTTTTCTTTTCCAAGCTCTCTCTAGAAAAGGCATTGATGCCTTCAAAGATGACAAAGATCTCAAGAAAGGTGAATCCATAGCACCAGAGCTGCTACAAGCCATTGAAGGATCTTGCCTTTTTGTCGTGGTCTTTTCGAAGAACTATGCTTCCTCAACTTGGTGTTTGCGGGAACTGGCAGAGATCTGTAATTGCATTGAAACATCGCAGAGACGTGTTCTGCCTATTTTTTATGATGTTGATCCATCTGAAGTGAGAAAGCAGAGTGGATATTTTGAGAAAGCCTTTGCTGAACATGAGAAGAGATTCAAAGAAGATAAAAAGAAGATGCAGGAAGTACAGGGATGGAGAGAAGCTCTGAAACAAGTGACAAGTGACCAATCTCTCTGGCCACAATGCGCGGAGATTGAAGAAATTGTTGAAAAGATAAAATATATATTGGGTCAAAACTTTTCTAGTCTTCCAAACGATGATTTAGTCGGGATGAAATCTCGTGTTGAAGAATTAGCACAGCTTTTGTGTTTAGGGTCAGTTAATGACGTCCAAGTTGTCGGAATTAGTGGGTTGGGGGAAATAGAAAAGACAACTCTTGGTCGTGCTTTATATGAAAGAATCTCTCATAAATATGCTTTGTGTTGTTTTATTGATGATAGGGAGCAAAATCATCATAATTACAGGGATCAACATATATTGAGGGCACATGGTGTAGAAGAAGTTTACCAAGTCCAGCCATTGAATGAAGATGTTGTTCGATTGTTTTGTAGAAATGCTTTCAAAAGTAATTATATTATGAGGCATCCTTTAGCAATTGAAGTATTGAGCTCATCCTTGTTTTGTCGAAATGTCCTACAATGGAGAACTGCGTTGGCCAAATTTAAAAACAATAAAAGTAAAGATATTACGAATGTGCTGCGAATAAGTTTTGATGAGTTGGAGGACATAGAGAAGGACATATTTCTTGATATTGTTTGTTTCTTCCCCATTTGTGGAGAGCAATATGCAAAGAAAATTCTAGATTTTCGTGGATTTCATCATGAATATGGCCTACAAATTCTTGTTGATATATCACTCATATGCATGAAAAAGGGGATAATTCATATGCATAGCTTGTTGAGCAATCTCGGCAGATGCATTGTTAGAGAAAAATCACCCAAGGAGCCAAGGAAGTGGAGTAGGTTGTGGGATTACAAAGATTTCCACAATGTTATGTCAAACAATATGGGTCGATGCTCAAACGTGTTATCTGGCAAAATAAATTTTTCTGGAAAATTTGATAACCTTTCCAATGAATTAAGATATCTTTCTTGGAATGAATATCTTTTTGAGTGTTTGCCACCAAGTTTTGAAGCAAACAAACTTGTAGAATTGATCTTGTATGCTAGCAACATCAAACAATTATGGAAAGGTAGAAAGTGTCTACACAATTTGATATATTTGATTCTCTCTCACTCCAAAAATTTAATTGAGATACATGATTTAATAGAGGCCCTAAATCTTGAGCGGCTAGATCTCCAAGGATGTATACAACTTAAGAAGATTCATCCATCTATTGGCCTTCTAAGAAAGGTTATTGATGCAATCTTCCCTAGAAAGGGACCAGTCACTAGAGCCATGAGCAAGAGGATTGGGCTAGAGCTGCTGAAGAAGGCCCTA
Predicted protein sequences of Glyma06g40820
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g40820.2 sequence type=predicted peptide gene model=Glyma06g40820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRTYDVFVSFRSEDTRNNFTGFLFQALSRKGIDAFKDDKDLKKGESIAPELLQAIEGSCLFVVVFSKNYASSTWCLRELAEICNCIETSQRRVLPIFYDVDPSEVRKQSGYFEKAFAEHEKRFKEDKKKMQEVQGWREALKQVTSDQSLWPQCAEIEEIVEKIKYILGQNFSSLPNDDLVGMKSRVEELAQLLCLGSVNDVQVVGISGLGEIEKTTLGRALYERISHKYALCCFIDDREQNHHNYRDQHILRAHGVEEVYQVQPLNEDVVRLFCRNAFKSNYIMRHPLAIEVLSSSLFCRNVLQWRTALAKFKNNKSKDITNVLRISFDELEDIEKDIFLDIVCFFPICGEQYAKKILDFRGFHHEYGLQILVDISLICMKKGIIHMHSLLSNLGRCIVREKSPKEPRKWSRLWDYKDFHNVMSNNMGRCSNVLSGKINFSGKFDNLSNELRYLSWNEYLFECLPPSFEANKLVELILYASNIKQLWKGRKCLHNLIYLILSHSKNLIEIHDLIEALNLERLDLQGCIQLKKIHPSIGLLRKVIDAIFPRKGPVTRAMSKRIGLELLKKAL