SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G60710 | AT | Annotation by Michelle Graham. TAIR10: NAD(P)-linked oxidoreductase superfamily protein | chr1:22355073-22356627 REVERSE LENGTH=345 | SoyBase | E_val: 0 | ISS |
| GO:0006094 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gluconeogenesis | SoyBase | N/A | ISS |
| GO:0006096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycolysis | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009805 | GO-bp | Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process | SoyBase | N/A | ISS |
| GO:0009963 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| KOG1575 | KOG | Voltage-gated shaker-like K+ channel, subunit beta/KCNAB | JGI | ISS | |
| PTHR11732 | Panther | ALDO/KETO REDUCTASE | JGI | ISS | |
| PTHR11732:SF12 | Panther | OXIDOREDUCTASE | JGI | ISS | |
| PF00248 | PFAM | Aldo/keto reductase family | JGI | ISS | |
| UniRef100_A2Q5B6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aldo/keto reductase n=1 Tax=Medicago truncatula RepID=A2Q5B6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KEA0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KEA0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g40790 not represented in the dataset |
Glyma06g40790 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g260200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g40790.1 sequence type=CDS gene model=Glyma06g40790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGAGAGTGGGTAGAATGAAACTTGGTTCAGAAGGGTTTGAAGTGTCTATGCAGGGACTTGGGTGCATGGGCATGTCTGCATTCTATGGTCCTCCTAAGCCAGAGCCCGATATGATTGCACTCATCCACCACGCCGTCCAAAGCGGTGTCACTTTTCTTGACACTTCTGATGTCTATGGCCCTCACACCAATGAACTCCTTCTGGGAAAGGCTTTGAAGGGAGGGGTTAGAAAGAAGGTTGAATTGGCTACCAAGTTTGGAATCAGCTATCCTGAAGGGAAATGGGAGATCCGTGGTGATCCAGCATACGTGAGGGATGCTTGTGAGGGCAGTTTAAAGAGGCTTGGTATCGATTGCATCGATCTCTATTACCAACATCGTATTGATACTCGTGTGCCTATTGAAGTCACGATTGGGGAGCTTAAAAAACTTGTTGAGGAAGGCAAAATAAAATACATTGGTCTGTCTGAGGCCTCGGCTTCAACAATCAGAAGAGCACATGCAGTTCATCCGATAACAGCTGTGCAGTTGGAGTGGTCACTATGGTCAAGAGATGTGGAGGAGGAAATAGTTCCAACATGCAGGGAACTTGGTATTGGAATTGTTGCATATAGTCCTCTTGGGCGAGGATTCTTGTCATTGGGAACAAAGTTGCTTGAGAATTTGGCACAAGATGACTTCCGGCAGACTCTGCCTAGATTTCAACCTGAAAATTTGGAGCAGAACAAGATAATATTCGCAAGGGTTAATGAACTGGCTGCAAAGAAGAGATGTACACCATCTCAGCTTGCATTGTCCTGGGTTCATCACCAAGGAAAAGATGTGTGCCCTATTCCTGGAACCACCAAACTTGAGAACTTCAATCAGAACATTGGGGCTTTGTCTGTCAAACTAACACCAGAAGAAATGGCGGAACTTGAGTCCCTTGCTGCTCTAGATGCTGTCAAGGGTGATAGATATGCGGATGATGGTTTATCTACGTGGAAGGACTCTGAAACTCCACCACTTTCTTCTTGGAAAGCTGCATGA
>Glyma06g40790.1 sequence type=predicted peptide gene model=Glyma06g40790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MARVGRMKLGSEGFEVSMQGLGCMGMSAFYGPPKPEPDMIALIHHAVQSGVTFLDTSDVYGPHTNELLLGKALKGGVRKKVELATKFGISYPEGKWEIRGDPAYVRDACEGSLKRLGIDCIDLYYQHRIDTRVPIEVTIGELKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQLEWSLWSRDVEEEIVPTCRELGIGIVAYSPLGRGFLSLGTKLLENLAQDDFRQTLPRFQPENLEQNKIIFARVNELAAKKRCTPSQLALSWVHHQGKDVCPIPGTTKLENFNQNIGALSVKLTPEEMAELESLAALDAVKGDRYADDGLSTWKDSETPPLSSWKAA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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