Glyma06g40760 - SoyBase

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Report for Sequence Feature Glyma06g40760

Feature Type:	gene_model
Chromosome:	Gm06
Start:	43927661
stop:	43932236
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g40760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G20640	AT	Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr3:7210654-7213199 REVERSE LENGTH=454	SoyBase	E_val: 3.00E-87	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
UniRef100_G7ZX05	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor bHLH123 n=1 Tax=Medicago truncatula RepID=G7ZX05_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KE98	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KE98_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g40760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g40760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g260000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g40760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g40760

Limit To All Plant Sequences

>Glyma06g40760.2   sequence type=transcript   gene model=Glyma06g40760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCACTGTTCCCATTCCCCTCACCAAACCCATTTTTCTCCCTTCACTCCTCAATATAAATACTCCAAAGTTTTGAACCTTTTTTCCATTCATTCATTTTCTAGTAGTCTCACCCCTTCACACAGCACCACACATATTATTACATTACACACACACACAAAAAAAAAAAAAAAACTGACCCAGCATCCTTAATTTCATCAAAATATTTTTCATGTTTATGTGAAGATCACTGAAGTGAATCCCCCCCCAACATATATATCAGCTATGTCAGATGATCAATTTCAAGCAAGTGGAAACTGGTGGGAATCAGCAGCAAGAAACGTTAGGTTTGAGAGTGGTGAATCACAGTCTTCTTCTTCTGGCCTCACCAACAATATGGGAAGCTATGAAGCTTCTTGGCAACATCATGACATGGCAACAACAAGGTCTTCTAATTCTTCCATAGATAATAACTCTGTCTCAGGTGGTTCCTCTGTGATGTTCCATGACCAGAAGCAGCTTCAACAAGTTCAGCCACATCATCATGAGTCTTCAGCTGCAGCCACTTCCACCAATGACCCCAACTTGCACATGATGGGCTTGGGCCTCTCTTCTCAGGCCATGGACTGGAATCAAGCATCTTTGCAGCTCCGAGGTGAGAAGGGTTCAGAAAGCAGTTTCAGGTCGATGTTGCAAGAGAATTTGAGCTCATCAAATACCAATTTTCAGCCGCAAGAAAGTGGGAGCAATATAGGGTTGTCTCAACACCACCACCATCACCATCATCATCAACAACTTCATTGGAGGCCAGAAAAGTTGTTCTCTGCCGAGTCATCAAGCAACGAATTCAAGAGGGGTTTCTCCTTGGACCAAACACAGTTTTCTCCTCAATACAGCTCTGGGGACAGCACTGTCACAAGCCAAGGCTTGCCTTGTTCTTTTCAGATGGACTATGTTGGGAACCCTTCTTCAATATTGCAAGGACTTTTGGGACAAGAGAGCAACAACAACAACAACCAACAACAACAACAACCCTACCAAGGTGGTGGTGGTGGTGCCATGAATTTTGCTTACTCAGCAGCAGCAAGCTATGGTTTGAACTCCAATGTTGAGTTGGTGCGTTCTTGGTCCAAAGTTCCTCAGTTTCTGAGAGCTTCACCGCCAAAACAACAACCCAATAATCAGTTGCATTTCACCAACAACGCACCCTTTTGGAACGCGAATTCTGAGCCTGCTATTAAGGATTCTCGATCCAGCTTCATCCCTTCTTTGCATCCACCCTTCTCCACATCAAATTTCGATGTACAATCAAAGAATATATCTGAAGTTAGAGATTCCGGTGGTGTGGTAAAGAAAAGTGGAAGTGAGGCAGCACCCAAAAGGCCCAGGAACGAAACCCCATCACCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTTTCACCTTTCGGAAAGACTGATACAGCGTCAGTGCTCTCTGAAGCCATTGAATATATCAAATTCCTCCATGAACAAGTGACTGTGCTAAGTACCCCGTATATGAAAAGTGGTGCTCCCATACAGCATCAGCAGAGTTCTGGAAAATCTAAGGAATCTGAGGGTCCAAAGCAGGATCTTAGAAGCCGAGGGCTATGTCTGGTGCCAGTTTCTAGTACATTTCCAGTGACTCACGAACCCACAGTTGAGTATTGGACACCAACATTTGGAGGAACTTACAGATAGCTAGCTTCATTAATTAATTATAATGGGTGGCAAAAAGTGGCACGGAAGGAGTACTCTCAGCAACAACAACAACAACAACAACATGCATGTCATATCAAACCCTGGCCAAGTTGGGAATGATGAGATGAAAGAAAAAGATATGGAGCAGGAGAGAAAAAAGGCCACACATAAATATGTATAGTTAGTTCTTCCTCTGATGGAAATTAAAGATATTATTTAATAAAAAAAGGATATAGAGTTGAAAAGAGAGGGAAGAAAGGGAAATGACCCTTCACAAGAAGGGTCATATTGATGGACCAACTACATGAAGAATGATGCAAGGGTAAGAGCTGGAACTACCGCTTTAGTTCAAGGAAAAGTAAAAAACTAATTTGGAGGTATCATTGAAATATAGAAGAGTGAGTGAGTGTGGGATATGTCATTTGATTGGAAATCTCACTTTTGATTTGTTTATTTCTTTAGAATATGTAAGTGGAAGTCAGAGGGTGGCCCACACTGCGCCCCTTTCATTTTTTGTTTCAAAATTGTGTTCAAATTAAACATTAATTTACATTTACCATATATATTTTGGAGATGCTTGCATACATGCTTTTGTGTTTTGTGATGAATGGTCACATACAGGGGCTTCTATTGGAAGCACATGTAAAAAGAGAAAACCCACAAGTGTTTATCCTCAGCAAAGTTCTGCAAATGGTCCAGATTTTAAATGACGTGAGCATACGTAATTATTCTCCCTTCTTATTCCTAAAAAGAATTAAAATTGTAGAAAACTT

Coding sequences of Glyma06g40760

Limit To All Plant Sequences

>Glyma06g40760.1   sequence type=CDS   gene model=Glyma06g40760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGATGATCAATTTCAAGCAAGTGGAAACTGGTGGGAATCAGCAGCAAGAAACGTTAGGTTTGAGAGTGGTGAATCACAGTCTTCTTCTTCTGGCCTCACCAACAATATGGGAAGCTATGAAGCTTCTTGGCAACATCATGACATGGCAACAACAAGGTCTTCTAATTCTTCCATAGATAATAACTCTGTCTCAGGTGGTTCCTCTGTGATGTTCCATGACCAGAAGCAGCTTCAACAAGTTCAGCCACATCATCATGAGTCTTCAGCTGCAGCCACTTCCACCAATGACCCCAACTTGCACATGATGGGCTTGGGCCTCTCTTCTCAGGCCATGGACTGGAATCAAGCATCTTTGCAGCTCCGAGGTGAGAAGGGTTCAGAAAGCAGTTTCAGGTCGATGTTGCAAGAGAATTTGAGCTCATCAAATACCAATTTTCAGCCGCAAGAAAGTGGGAGCAATATAGGGTTGTCTCAACACCACCACCATCACCATCATCATCAACAACTTCATTGGAGGCCAGAAAAGTTGTTCTCTGCCGAGTCATCAAGCAACGAATTCAAGAGGGGTTTCTCCTTGGACCAAACACAGTTTTCTCCTCAATACAGCTCTGGGGACAGCACTGTCACAAGCCAAGGCTTGCCTTGTTCTTTTCAGATGGACTATGTTGGGAACCCTTCTTCAATATTGCAAGGACTTTTGGGACAAGAGAGCAACAACAACAACAACCAACAACAACAACAACCCTACCAAGGTGGTGGTGGTGGTGCCATGAATTTTGCTTACTCAGCAGCAGCAAGCTATGGTTTGAACTCCAATGTTGAGTTGGTGCGTTCTTGGTCCAAAGTTCCTCAGTTTCTGAGAGCTTCACCGCCAAAACAACAACCCAATAATCAGTTGCATTTCACCAACAACGCACCCTTTTGGAACGCGAATTCTGAGCCTGCTATTAAGGATTCTCGATCCAGCTTCATCCCTTCTTTGCATCCACCCTTCTCCACATCAAATTTCGATGTACAATCAAAGAATATATCTGAAGTTAGAGATTCCGGTGGTGTGGTAAAGAAAAGTGGAAGTGAGGCAGCACCCAAAAGGCCCAGGAACGAAACCCCATCACCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTTTCACCTTTCGGAAAGACTGATACAGCGTCAGTGCTCTCTGAAGCCATTGAATATATCAAATTCCTCCATGAACAAGTGACTGTGCTAAGTACCCCGTATATGAAAAGTGGTGCTCCCATACAGCATCAGCAGAGTTCTGGAAAATCTAAGGAATCTGAGGGTCCAAAGCAGGATCTTAGAAGCCGAGGGCTATGTCTGGTGCCAGTTTCTAGTACATTTCCAGTGACTCACGAACCCACAGTTGAGTATTGGACACCAACATTTGGAGGAACTTACAGATAG

>Glyma06g40760.2   sequence type=CDS   gene model=Glyma06g40760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGATGATCAATTTCAAGCAAGTGGAAACTGGTGGGAATCAGCAGCAAGAAACGTTAGGTTTGAGAGTGGTGAATCACAGTCTTCTTCTTCTGGCCTCACCAACAATATGGGAAGCTATGAAGCTTCTTGGCAACATCATGACATGGCAACAACAAGGTCTTCTAATTCTTCCATAGATAATAACTCTGTCTCAGGTGGTTCCTCTGTGATGTTCCATGACCAGAAGCAGCTTCAACAAGTTCAGCCACATCATCATGAGTCTTCAGCTGCAGCCACTTCCACCAATGACCCCAACTTGCACATGATGGGCTTGGGCCTCTCTTCTCAGGCCATGGACTGGAATCAAGCATCTTTGCAGCTCCGAGGTGAGAAGGGTTCAGAAAGCAGTTTCAGGTCGATGTTGCAAGAGAATTTGAGCTCATCAAATACCAATTTTCAGCCGCAAGAAAGTGGGAGCAATATAGGGTTGTCTCAACACCACCACCATCACCATCATCATCAACAACTTCATTGGAGGCCAGAAAAGTTGTTCTCTGCCGAGTCATCAAGCAACGAATTCAAGAGGGGTTTCTCCTTGGACCAAACACAGTTTTCTCCTCAATACAGCTCTGGGGACAGCACTGTCACAAGCCAAGGCTTGCCTTGTTCTTTTCAGATGGACTATGTTGGGAACCCTTCTTCAATATTGCAAGGACTTTTGGGACAAGAGAGCAACAACAACAACAACCAACAACAACAACAACCCTACCAAGGTGGTGGTGGTGGTGCCATGAATTTTGCTTACTCAGCAGCAGCAAGCTATGGTTTGAACTCCAATGTTGAGTTGGTGCGTTCTTGGTCCAAAGTTCCTCAGTTTCTGAGAGCTTCACCGCCAAAACAACAACCCAATAATCAGTTGCATTTCACCAACAACGCACCCTTTTGGAACGCGAATTCTGAGCCTGCTATTAAGGATTCTCGATCCAGCTTCATCCCTTCTTTGCATCCACCCTTCTCCACATCAAATTTCGATGTACAATCAAAGAATATATCTGAAGTTAGAGATTCCGGTGGTGTGGTAAAGAAAAGTGGAAGTGAGGCAGCACCCAAAAGGCCCAGGAACGAAACCCCATCACCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTTTCACCTTTCGGAAAGACTGATACAGCGTCAGTGCTCTCTGAAGCCATTGAATATATCAAATTCCTCCATGAACAAGTGACTGTGCTAAGTACCCCGTATATGAAAAGTGGTGCTCCCATACAGCATCAGCAGAGTTCTGGAAAATCTAAGGAATCTGAGGGTCCAAAGCAGGATCTTAGAAGCCGAGGGCTATGTCTGGTGCCAGTTTCTAGTACATTTCCAGTGACTCACGAACCCACAGTTGAGTATTGGACACCAACATTTGGAGGAACTTACAGATAG

Predicted protein sequences of Glyma06g40760

Limit To All Plant Sequences

>Glyma06g40760.1   sequence type=predicted peptide   gene model=Glyma06g40760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDDQFQASGNWWESAARNVRFESGESQSSSSGLTNNMGSYEASWQHHDMATTRSSNSSIDNNSVSGGSSVMFHDQKQLQQVQPHHHESSAAATSTNDPNLHMMGLGLSSQAMDWNQASLQLRGEKGSESSFRSMLQENLSSSNTNFQPQESGSNIGLSQHHHHHHHHQQLHWRPEKLFSAESSSNEFKRGFSLDQTQFSPQYSSGDSTVTSQGLPCSFQMDYVGNPSSILQGLLGQESNNNNNQQQQQPYQGGGGGAMNFAYSAAASYGLNSNVELVRSWSKVPQFLRASPPKQQPNNQLHFTNNAPFWNANSEPAIKDSRSSFIPSLHPPFSTSNFDVQSKNISEVRDSGGVVKKSGSEAAPKRPRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKSGAPIQHQQSSGKSKESEGPKQDLRSRGLCLVPVSSTFPVTHEPTVEYWTPTFGGTYR*

>Glyma06g40760.2   sequence type=predicted peptide   gene model=Glyma06g40760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSDDQFQASGNWWESAARNVRFESGESQSSSSGLTNNMGSYEASWQHHDMATTRSSNSSIDNNSVSGGSSVMFHDQKQLQQVQPHHHESSAAATSTNDPNLHMMGLGLSSQAMDWNQASLQLRGEKGSESSFRSMLQENLSSSNTNFQPQESGSNIGLSQHHHHHHHHQQLHWRPEKLFSAESSSNEFKRGFSLDQTQFSPQYSSGDSTVTSQGLPCSFQMDYVGNPSSILQGLLGQESNNNNNQQQQQPYQGGGGGAMNFAYSAAASYGLNSNVELVRSWSKVPQFLRASPPKQQPNNQLHFTNNAPFWNANSEPAIKDSRSSFIPSLHPPFSTSNFDVQSKNISEVRDSGGVVKKSGSEAAPKRPRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKSGAPIQHQQSSGKSKESEGPKQDLRSRGLCLVPVSSTFPVTHEPTVEYWTPTFGGTYR*

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