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Report for Sequence Feature Glyma06g40601

Feature Type:gene_model
Chromosome:Gm06
Start:43773270
stop:43776039
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g40601
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G27300AT Annotation by Michelle Graham. TAIR10: S-locus lectin protein kinase family protein | chr4:13669308-13672348 REVERSE LENGTH=815 SoyBaseE_val: 4.00E-119ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0046777GO-bp Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation SoyBaseN/AISS
GO:0048544GO-bp Annotation by Michelle Graham. GO Biological Process: recognition of pollen SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
GO:0030246GO-mf Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding SoyBaseN/AISS
GO:0031625GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin protein ligase binding SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF432Panther SUBFAMILY NOT NAMED JGI ISS
PF07714PFAM Protein tyrosine kinase JGI ISS
PF08276PFAM PAN-like domain JGI ISS
UniRef100_G7JZD9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cysteine-rich receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G7JZD9_MEDTR SoyBaseE_val: 7.00E-175ISS
UniRef100_I1KE86UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KE86_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g40601
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g40601 not represented in the dataset
Glyma06g40601 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g40601 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g258300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g40601
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g40601
>Glyma06g40601.1   sequence type=CDS   gene model=Glyma06g40601   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCCTAATCCACTTTATGATTACAAATATGTGGTTAATGAAGATGAAGTGTATGTGAGATACACTCTCAAGAATAGTTCTGTGATTTCGATAATTGTTCCGAAATCTGCGCAAGAATGGAATGAAATGGATTGGACAAAAGGATGCACGCGTATTGAACCGTGGAGTTGTGGTGTCAGAAACAAAGATGGTTTTCGTAGATATGCTGGGATGAAAGTGCCGGATACGACACATTCTTGGATAAATGCAAGCATGACACTTGAAGATTGCAAGGCCAAATGCTTGGAAAATTGTTCTTGCACAGCTTATGCAAACTTAGACACAAATGGAAAGGGAAGTGGTTGTGCTCCATTTGGTTTGATTTATGTTCGAATGGCCATTTCGGATACTGTATATGCAGATGCTAAACATAATAAGCATCCAAAAAAGGTAGTTTTGGTCGTTGTAGTCATAGTTTCGGTAGTCCTTCTGATGCTATTGGCATGCTATTACATTGACATTAACAGAACAAAGTATAAAGAGTTTTCTCTTAAAACTGCTCTGTATTTATTACATATGGGGATTAGGAGGAAGATGAAGGTGAACAAGAAAATTTGGAGCTTCCTTTCTTTTGATCTTGCTACAATAATTAATGCCACTAATAACTTCTTAAATGACAACAAGCTCGGTGAAGGTGGTTTTTGGCCAGTATACAAGGGTACTTTGCTAGACGGGCAAGAGATTGCAGTCAAAGGCTTTCAAGGAGCTCGATCTGGACAAGGATTGACCGAATTTAAGAATGAGGTTATATTGTTTGCCAAACTTCAGCATCTAAATCTTGGTTGTTGCATCGAAGGAGAGGAGAAAATGTTACTCTATGAATACATGTCCAACAAAACCCTGGATTCTTTTCTTTTTGATTCGTTTCAAAGTAAACTTTTAGATTGGCCTATGCGCTTTAATATCTTGTGTGCAATTGCTCGAGGGCTTCAATATCGTCATCAAGATTCTAGATTGAGGATTATACACAGAGATCTAAAAGCAAGTAATGTTTTATTAGATGATAATCTGAACCCAAAAATTTCAGATTTTGGCTTGACTAAAATATGTGGTGATCAAGTTGAAGGGAATACAAACAGAATTTTTGGAACATACGGTTACATGGCGCCTGAATATGCCATTGACGGATTATTCTCCATAAAGTCAGATGTATTTAGCTTTGGTGTATTATTGTTAGAAATGAGATTGTGGAAAGATGGCACTCCAGAGCAATTGATTGATGCTTGTTTGGTGGATTCATGTAAAGTATCTGAAGTTGTAACATGCATTCAAATTGGTCTTTTGTGTGTGCAACATCATCCCAACGATAGGCCAAATATGATATCTGTTGTTGTAATGTGGAGCAGCAATAATGTTTTATCACAACCTAAGGTAGCTAATTTTTTAACCAACAATATTTCACTTATTGAAGGTGAGCAATCAAGAGGCAGGCAAGAGTCTTCAATCAACGGAGTAACTATCTCAGTTTTAAATGCTAGATAG
Predicted protein sequences of Glyma06g40601
>Glyma06g40601.1   sequence type=predicted peptide   gene model=Glyma06g40601   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKPNPLYDYKYVVNEDEVYVRYTLKNSSVISIIVPKSAQEWNEMDWTKGCTRIEPWSCGVRNKDGFRRYAGMKVPDTTHSWINASMTLEDCKAKCLENCSCTAYANLDTNGKGSGCAPFGLIYVRMAISDTVYADAKHNKHPKKVVLVVVVIVSVVLLMLLACYYIDINRTKYKEFSLKTALYLLHMGIRRKMKVNKKIWSFLSFDLATIINATNNFLNDNKLGEGGFWPVYKGTLLDGQEIAVKGFQGARSGQGLTEFKNEVILFAKLQHLNLGCCIEGEEKMLLYEYMSNKTLDSFLFDSFQSKLLDWPMRFNILCAIARGLQYRHQDSRLRIIHRDLKASNVLLDDNLNPKISDFGLTKICGDQVEGNTNRIFGTYGYMAPEYAIDGLFSIKSDVFSFGVLLLEMRLWKDGTPEQLIDACLVDSCKVSEVVTCIQIGLLCVQHHPNDRPNMISVVVMWSSNNVLSQPKVANFLTNNISLIEGEQSRGRQESSINGVTISVLNAR*






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