|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT4G39100 | AT | Annotation by Michelle Graham. TAIR10: PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein | chr4:18218712-18220134 REVERSE LENGTH=169 | SoyBase | E_val: 3.00E-20 | ISS |
GO:0006096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycolysis | SoyBase | N/A | ISS |
GO:0006333 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin assembly or disassembly | SoyBase | N/A | ISS |
GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
GO:0006833 | GO-bp | Annotation by Michelle Graham. GO Biological Process: water transport | SoyBase | N/A | ISS |
GO:0006972 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic response | SoyBase | N/A | ISS |
GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
GO:0009266 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus | SoyBase | N/A | ISS |
GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
GO:0009791 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-embryonic development | SoyBase | N/A | ISS |
GO:0016558 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix | SoyBase | N/A | ISS |
GO:0042744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process | SoyBase | N/A | ISS |
GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
GO:0048767 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair elongation | SoyBase | N/A | ISS |
GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
PTHR12505 | Panther | PHD FINGER TRANSCRIPTION FACTOR | JGI | ISS | |
PTHR12505:SF8 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
UniRef100_D3YBF8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Zinc-mediated transcriptional activator n=1 Tax=Trifolium repens RepID=D3YBF8_TRIRP | SoyBase | E_val: 7.00E-20 | ISS |
UniRef100_I1K740 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K740_SOYBN | SoyBase | E_val: 2.00E-22 | ISS |
Glyma06g40590 not represented in the dataset |
Glyma06g40590 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g40590.1 sequence type=CDS gene model=Glyma06g40590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAATTTCACGACTCTAAGGAGGTTTTCCTCTCCTGTCACTTCAATCTTCAGAGCGCCGACACAATTGAAGCCAGATGTACGCTCCACAGCTTCAAGAGCTACACGAAGCTCGATGCTGTCGAAAATGACGATATCTCTTCCACCGGCGCCTTCAATCCTGATAGAGTTGATTCTCTTATAATCTCTGTTGCGCTAAATTCGAAATATAAATTGTTTTTGTTTTTGGTAGAATTTCGTTTTGGAATGGAATTTGATTTTTATTTGTTTGTGAAGTTGAAGATAATTCGCCCCAAGCTCAAGATATTGATAAAAGAATTCGTGCTCTCAAAAAGAAGAAGAAGGTACGAATTATTCTCAAGTTTGAATTTTCACACTCTCCTTCTCTCTGTTTCTGGATACGTATGA
>Glyma06g40590.1 sequence type=predicted peptide gene model=Glyma06g40590 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKFHDSKEVFLSCHFNLQSADTIEARCTLHSFKSYTKLDAVENDDISSTGAFNPDRVDSLIISVALNSKYKLFLFLVEFRFGMEFDFYLFVKLKIIRPKLKILIKEFVLSKRRRRYELFSSLNFHTLLLSVSGYV*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||