Glyma06g40390 - SoyBase

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Report for Sequence Feature Glyma06g40390

Feature Type:	gene_model
Chromosome:	Gm06
Start:	43544679
stop:	43546530
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g40390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G73880	AT	Annotation by Michelle Graham. TAIR10: UDP-glucosyl transferase 89B1 \| chr1:27785143-27786564 FORWARD LENGTH=473	SoyBase	E_val: 3.00E-134	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009062	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008194	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glycosyltransferase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
GO:0035251	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-glucosyltransferase activity	SoyBase	N/A	ISS
GO:0080043	GO-mf	Annotation by Michelle Graham. GO Molecular Function: quercetin 3-O-glucosyltransferase activity	SoyBase	N/A	ISS
GO:0080044	GO-mf	Annotation by Michelle Graham. GO Molecular Function: quercetin 7-O-glucosyltransferase activity	SoyBase	N/A	ISS
GO:0080046	GO-mf	Annotation by Michelle Graham. GO Molecular Function: quercetin 4'-O-glucosyltransferase activity	SoyBase	N/A	ISS
KOG1192	KOG	UDP-glucuronosyl and UDP-glucosyl transferase	JGI		ISS
PTHR11926	Panther	GLUCOSYL/GLUCURONOSYL TRANSFERASES	JGI		ISS
PTHR11926:SF15	Panther	UDP-GLUCURONOSYLTRANSFERASE RELATED	JGI		ISS
PF00201	PFAM	UDP-glucoronosyl and UDP-glucosyl transferase	JGI		ISS
UniRef100_C6ZJB2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UGT1 n=1 Tax=Pueraria montana var. lobata RepID=C6ZJB2_PUEML	SoyBase	E_val: 0	ISS
UniRef100_I1KE79	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KE79_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g40390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g40390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.14g054400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g40390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g40390

Limit To All Plant Sequences

>Glyma06g40390.1   sequence type=CDS   gene model=Glyma06g40390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCACCGCAACAACTCACGTGCTCGCTTATCCCTTCCCTACCTCCGGTCACGTGATCCCTCTCTTAGACTTCACCAAAACCCTAGTCTCTCGCGGCGTCCATGTCACCGTTCTGGTCACACCCTACAACGAAGCCTTACTTCCAAAAAACTATTCCCCTCTTCTCCAAACGCTTCTCCTCCCCGAACCTCAGTTCCCGAACCCGAAGCAAAACAGGCTCGTATCCATGGTAACCTTCATGCGGCACCACCACTACCCGATCATTATGGACTGGGCCCAGGCCCAGCCCATTCCTCCTGCGGCTATTATATCAGATTTCTTCCTCGGTTGGACCCACCTCCTCGCACGTGACCTCCACGTGCCGCGCGTAGTCTTCTCCCCCTCCGGCGCCTTCGCGCTCTCCGTCTCCTACTCCCTCTGGCGCGACGCCCCCCAAAACGACAACCCGGAAGACCCAAACGGCGTTGTTTCGTTCCCAAATCTCCCAAATTCCCCATTCTACCCCTGGTGGCAGATCACGCACTTATTCCATGACACCGAGAGAGGAGGTCCCGAATGGAAGTTTCACAGAGAGAACATGCTTCTCAACATTGATTCCTGGGGCGTCGTTATCAACACATTCACCGAGTTAGAACAAGTTTACTTAAACCACTTGAAGAAAGAATTGGGACACGAAAGAGTCTTTGCGGTGGGCCCGGTTCTGCCGATTCAAACCGGTTCGATTTCAACAAAACCGGAAGAACGAGGCGGGAACAGCACCGTTTCGCGACATGACATCATGGAATGGCTCGACGCACGTGACAAAGGTTCCGTTGTTTACGTGTGTTTCGGGAGCCGTACGTTTCTAACGAGTTCACAAATGGAGGTGTTGACACGTGCGTTGGAAATAAGTGGGGTGAACTTTGTTTTGTCCGTTAGGGTTCCTGAAAAAGGACACGTGGCGAAGGAGCACGGTACGGTGCCGCGTGGGTTTTCAGATAGGGTGAAAGGAAGGGGATTTGTGATAGAGGGATGGGCCCCACAGTTGGTTATACTGAGTCACCGCGCGGTGGGGGCTTTCGTGAGTCACTGCGGGTGGAACTCGGTGGTGGAAGGGTTGATTTCGGGGGTGGCGATGCTGACGTGGCCGATGGGTGCGGATCAGTATACGAACGCGAAGCTTCTGGTGGATGAGTTGGGCGTGGCGGTTCGCGCCGCGGAGGGTGAGAAGGTAATTCCAGAAGCTAGCGAGTTGGGGAAGAGAATTGAAGAAGCTTTGGGGAGAACGAAGGAGAGGGTAAAAGCGGAAATGTTGAGGGATGATGCGTTGCTTGCGATTGGGAATGGTGGCAGCTCGCAGAGGGAATTGGATGCGCTCGTGAAGCTTCTAAGTGAAGTTCAGCGTGTGGAAAGCACTTCTTGA

Predicted protein sequences of Glyma06g40390

Limit To All Plant Sequences

>Glyma06g40390.1   sequence type=predicted peptide   gene model=Glyma06g40390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTATTHVLAYPFPTSGHVIPLLDFTKTLVSRGVHVTVLVTPYNEALLPKNYSPLLQTLLLPEPQFPNPKQNRLVSMVTFMRHHHYPIIMDWAQAQPIPPAAIISDFFLGWTHLLARDLHVPRVVFSPSGAFALSVSYSLWRDAPQNDNPEDPNGVVSFPNLPNSPFYPWWQITHLFHDTERGGPEWKFHRENMLLNIDSWGVVINTFTELEQVYLNHLKKELGHERVFAVGPVLPIQTGSISTKPEERGGNSTVSRHDIMEWLDARDKGSVVYVCFGSRTFLTSSQMEVLTRALEISGVNFVLSVRVPEKGHVAKEHGTVPRGFSDRVKGRGFVIEGWAPQLVILSHRAVGAFVSHCGWNSVVEGLISGVAMLTWPMGADQYTNAKLLVDELGVAVRAAEGEKVIPEASELGKRIEEALGRTKERVKAEMLRDDALLAIGNGGSSQRELDALVKLLSEVQRVESTS*

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