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Report for Sequence Feature Glyma06g40270

Feature Type:gene_model
Chromosome:Gm06
Start:43431237
stop:43431419
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g40270
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G08450AT Annotation by Michelle Graham. TAIR10: calreticulin 3 | chr1:2668008-2671800 REVERSE LENGTH=370 SoyBaseE_val: 1.00E-26ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0006995GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to nitrogen starvation SoyBaseN/AISS
GO:0009617GO-bp Annotation by Michelle Graham. GO Biological Process: response to bacterium SoyBaseN/AISS
GO:0009626GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type hypersensitive response SoyBaseN/AISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0009697GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process SoyBaseN/AISS
GO:0010204GO-bp Annotation by Michelle Graham. GO Biological Process: defense response signaling pathway, resistance gene-independent SoyBaseN/AISS
GO:0031347GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of defense response SoyBaseN/AISS
GO:0034976GO-bp Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0045087GO-bp Annotation by Michelle Graham. GO Biological Process: innate immune response SoyBaseN/AISS
GO:0046283GO-bp Annotation by Michelle Graham. GO Biological Process: anthocyanin-containing compound metabolic process SoyBaseN/AISS
GO:0055074GO-bp Annotation by Michelle Graham. GO Biological Process: calcium ion homeostasis SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0005789GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
GO:0051082GO-mf Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding SoyBaseN/AISS
PTHR11073Panther CALRETICULIN AND CALNEXIN JGI ISS
PF00262PFAM Calreticulin family JGI ISS
UniRef100_C6TCW1UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TCW1_SOYBN SoyBaseE_val: 6.00E-29ISS
UniRef100_G7KRL3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Calreticulin-3 n=2 Tax=Medicago truncatula RepID=G7KRL3_MEDTR SoyBaseE_val: 3.00E-27ISS

Expression Patterns of Glyma06g40270
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g40270 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma06g40270
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g40270
>Glyma06g40270.1   sequence type=CDS   gene model=Glyma06g40270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATATTGTAGGTATTCAAACATCGAGTGATGCCAAACACTTTTCCATCTCTGCAAAAATACCAGAATTCACAAACAAGAACAAAATATTGGTCCTTCAGTATTCTGTAAAATTTGAGCAAGAGATTGAATGTGGTGGAGGTTACATCAAGCTTCTCTCTGGATTATTTAATCAAAAGAAGTTT
Predicted protein sequences of Glyma06g40270
>Glyma06g40270.1   sequence type=predicted peptide   gene model=Glyma06g40270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
DIVGIQTSSDAKHFSISAKIPEFTNKNKILVLQYSVKFEQEIECGGGYIKLLSGLFNQKKF






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