Glyma06g39810 - SoyBase

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Report for Sequence Feature Glyma06g39810

Feature Type:	gene_model
Chromosome:	Gm06
Start:	42754903
stop:	42757103
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g39810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G27310	AT	Annotation by Michelle Graham. TAIR10: B-box type zinc finger family protein \| chr4:13675853-13676616 FORWARD LENGTH=223	SoyBase	E_val: 1.00E-29	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PF00643	PFAM	B-box zinc finger	JGI		ISS
UniRef100_B9SIH7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SIH7_RICCO	SoyBase	E_val: 1.00E-27	ISS
UniRef100_I1KE57	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KE57_SOYBN	SoyBase	E_val: 1.00E-156	ISS

Expression Patterns of Glyma06g39810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g39810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g255300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g39810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g39810

Limit To All Plant Sequences

>Glyma06g39810.1   sequence type=CDS   gene model=Glyma06g39810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAATCATCAACAACATGCGTGTTGTGCGAGAAGAGGGCAATGATGCTCTGCGACTCGGACCAGGCTAAGCTATGCTGGGAATGCGACGAGAAAGTCCACAGCGCCAATTTCTTGGTCGCGAAACATTCTAGGGTTCTTTTATGTCGTTTGTGTCACTCCCCGACTCCGTGGAAGGCTTCGGGGATGAAACTCACGCCCACTGTGTCGTTTTGTAACCGCTGCGTTGCGGAACGGAACGCGAGGTGGAACCGATTGGTGAATAATGAAAATGAACATCAACAACAGCAACAACAACAACAACAGAGTGATTTTGTGGTGGATGATGGTAGGGAATATGGTTCTGATCATGTTTTTGATGATGACGATGGTGATTATAGTGATGATAGTGGTGAAGAAGAAGAAGAGGACGAGGATGATGAAGAGGAGAATGAGAATCAAGTGGTTCCAATGTCTTCTGGTTCTGCCACGTCACCACCTAAGGTTGCCTGTTTAGCGTTGAAGCGATTGAGAAACAACTCTTTTTCTGTCGATTCTTCACATGATGAGACAGCGTGCTCTTCATCTGAGATGCTTAGTTCTACATTGCCTAGTGGTGATGAATCAACCTCTTTGAGTAGTGTATTAAAGAGGCATCGGGTTGATTAG

Predicted protein sequences of Glyma06g39810

Limit To All Plant Sequences

>Glyma06g39810.1   sequence type=predicted peptide   gene model=Glyma06g39810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEESSTTCVLCEKRAMMLCDSDQAKLCWECDEKVHSANFLVAKHSRVLLCRLCHSPTPWKASGMKLTPTVSFCNRCVAERNARWNRLVNNENEHQQQQQQQQQSDFVVDDGREYGSDHVFDDDDGDYSDDSGEEEEEDEDDEEENENQVVPMSSGSATSPPKVACLALKRLRNNSFSVDSSHDETACSSSEMLSSTLPSGDESTSLSSVLKRHRVD*

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