Glyma06g39770 - SoyBase

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Report for Sequence Feature Glyma06g39770

Feature Type:	gene_model
Chromosome:	Gm06
Start:	42678147
stop:	42687225
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g39770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G20630	AT	Annotation by Michelle Graham. TAIR10: ubiquitin-specific protease 14 \| chr3:7203001-7208340 REVERSE LENGTH=797	SoyBase	E_val: 0	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0016579	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein deubiquitination	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004221	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin thiolesterase activity	SoyBase	N/A	ISS
GO:0004843	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-specific protease activity	SoyBase	N/A	ISS
GO:0008242	GO-mf	Annotation by Michelle Graham. GO Molecular Function: omega peptidase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG0944	KOG	Ubiquitin-specific protease UBP14	JGI		ISS
PTHR24006	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24006:SF36	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00443	PFAM	Ubiquitin carboxyl-terminal hydrolase	JGI		ISS
PF00627	PFAM	UBA/TS-N domain	JGI		ISS
PF02148	PFAM	Zn-finger in ubiquitin-hydrolases and other protein	JGI		ISS
UniRef100_I1KE56	UniRef	Annotation by Michelle Graham. Best UniRef hit: Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Glycine max RepID=I1KE56_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1KE56	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Glycine max RepID=I1KE56_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g39770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g39770

Paralog	Evidence	Comments
Glyma12g22240	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g39770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g255000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g39770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g39770

Limit To All Plant Sequences

>Glyma06g39770.1   sequence type=CDS   gene model=Glyma06g39770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAATCGAACCCATGGATTTGCTCCGCTCCTATCTCTCCCGGGTTCGGATCCCCGAACCCACCAATCGCATCTACAAGCACGAATGCTGCATTTCCTTCGACTCTCCGAGGTCAGAAGGTGGTTTGTTCATTGACATGTGCACTTTTCTTGCTTTTGGGAAAGATTTTGTTGGTTGGAATTATGAGAAGACTGGAAATCCTGTCTATTTGCATATAAAGCAGACAAAGAAGTTAGTTCCAGAAGACAGGCCTTCAAAGAAACCTACTCTCTTGGCTATAGGTGTTGATGGGGGATTTGATAACAATGAGCCTGAATATGAGGAAACACATAGTGTAGTTATATTACCTGAGTATGTTTCTCTTCCATTCCCTTCTGTGGAATTGCCAGAGAAGGTAAGGTTGGCAGTTGATGCAATCGTACTAGCTGAGGGTACTGAACGAAAGGAGCAACTTGCAGCTTGGACTGCTGATAAGAAAAAAGTTAGTTCCTATGCAACGAATTTACAACAGATTGACAATGGTGTTGTTATTCCGCCATCTGGGTGGAAATGTGCTAAATGTGACAAGGCAGACAATCTATGGCTAAACCTGACTGATGGAATGATTCTTTGTGAGAGGAAAAACTGGGATGGAACTGGTGGAAACAACCATGCTTTTGAGCATTACCAAGAGACAGGCTACCCTATTGCTGTAAAGCTTGGGACTATCACTGCTGATCTGGAAGCAGCAGATGTTTACTCTTATCCAGACGATGAAAGTGTCTTGGATCCACAATTAGCACAGCATCTGGCATTTTTTGGCCTTGACTTTTCATCACTACGAAAGACTGAAATGACAACTGCTGAAAGAGAACTTGATCACAATACAAATTTTGATTGGAATCGAATCCAAGAAAGTGGACAAGAAGTAGATCCAATTTTTGGACCTGGATATACAGGATTGGTCAATATTGGAAACAGTTGTTACATGGCAGCAACTATTCAAGTTGTGTTTTCAACAAGATCCTTCACATCACGGTACTATTTGAACCAAAGTCTAAAGAAGGCATTTGAGATGTCTCCTGCTGATCCCACTGTAGACCTAAATATGCAGCTAACAAAATTGGCTCACGGCATACTTTCTGGTAAATATTCTGTTCCGGCATTTGAGAATGACGAAAAAGAAAACGTTGCTACTTCAACTAGAACTGCTAAACAAGAAGGGATACGTCCACATATGTTTAAATCTGTAATAGCTGCCAGCCATCCTGAATTTTCATCTACGCAGCAACAGGATGCTTTAGAATTTTTCCTACATTTTCTTGATCAAGTTGAGCGAGCTAATACTGGGAAAACTGAACTGGATCCATCGAGGAGTTTCAAATTTGGTATTGAAGATAGAATTTTGTGTTCATCTGGAAAAGTTACATATAATAGAAGGAATGACTACATTCTTTCCCTCAATATCCCATTACATGAGGCAACTAATGAAGAAGAATTAGAATCCTTTCACAAACTGAAAGCAGAGAAACTTGCAGAAGGAAAGGAAATAAATGCCAATGAGATTGTGCGCCCAAGGGTACCTTTAGAAACTTGCCTTGTGAACTTCTCAGCTCCTGAGGAGATACAAGATTTTTACAGTACTGCTTTGAAGGCAAAGACAACAGCACTGAAGACTGCAGGTCTGACCTCATTTCCTGATTACCTGGTGTTACATATGCGGAGGTTTGTTATGGAGGCAGGACGGGAACCTAAAAAGCTTGATGTGCACATTGATGTTCCTGATATCATAGATATCAGTCACATGCGCAGCAAAGGTCAGCAGTCTGGGGAAGAGCTATTACCTGATGGTGTTCCTGGAGAGCAAGATTCTAACAAAATTTCGGCCAACGAAGAAATTGTTGCCCAGCTGGTTTCCATGGGCTTTAACCATCTCCATTGTCAGAAAGCTGCTATAAATACATCAAATGTTGGAGTAGAAGAGGCAATGAATTGGTTGTTATCTCACATGGATGATCCAGACATTGACAATCCTATTTCCAAAGGCCATGGCTCTGAGACAATTGTTGACCAATCAAAAGTTGATATTCTAATTTCTTTTGGATTTGAAGAAGAAATTGCTAGGAATGCTCTGAAGGCATCGGGTGGTGACATTGAGAAAGCAACAGATTGGATATTTAACAATCCTGATGCATCAGTCTCCAGTATGGATGCTTCCCCATCAAACGCTGAATCCACTACCAATGATGTTAACCTACCTGATGGAGGAGGGAAATATCGACTTATGGGGATTTTGAGCCACAGTGGAACCTCTTTGCAGTGTGGTCACTATGTTGCTCACATTTTAAAAGATGGAAGATGGGCAATTTTCAACGACAACAAGGTCGGGGCATCCATTGATCCTCCAAAGGAAATGGGCTATCTTTATTTCTTCGAGAGGCTTTGA

Predicted protein sequences of Glyma06g39770

Limit To All Plant Sequences

>Glyma06g39770.1   sequence type=predicted peptide   gene model=Glyma06g39770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTIEPMDLLRSYLSRVRIPEPTNRIYKHECCISFDSPRSEGGLFIDMCTFLAFGKDFVGWNYEKTGNPVYLHIKQTKKLVPEDRPSKKPTLLAIGVDGGFDNNEPEYEETHSVVILPEYVSLPFPSVELPEKVRLAVDAIVLAEGTERKEQLAAWTADKKKVSSYATNLQQIDNGVVIPPSGWKCAKCDKADNLWLNLTDGMILCERKNWDGTGGNNHAFEHYQETGYPIAVKLGTITADLEAADVYSYPDDESVLDPQLAQHLAFFGLDFSSLRKTEMTTAERELDHNTNFDWNRIQESGQEVDPIFGPGYTGLVNIGNSCYMAATIQVVFSTRSFTSRYYLNQSLKKAFEMSPADPTVDLNMQLTKLAHGILSGKYSVPAFENDEKENVATSTRTAKQEGIRPHMFKSVIAASHPEFSSTQQQDALEFFLHFLDQVERANTGKTELDPSRSFKFGIEDRILCSSGKVTYNRRNDYILSLNIPLHEATNEEELESFHKLKAEKLAEGKEINANEIVRPRVPLETCLVNFSAPEEIQDFYSTALKAKTTALKTAGLTSFPDYLVLHMRRFVMEAGREPKKLDVHIDVPDIIDISHMRSKGQQSGEELLPDGVPGEQDSNKISANEEIVAQLVSMGFNHLHCQKAAINTSNVGVEEAMNWLLSHMDDPDIDNPISKGHGSETIVDQSKVDILISFGFEEEIARNALKASGGDIEKATDWIFNNPDASVSSMDASPSNAESTTNDVNLPDGGGKYRLMGILSHSGTSLQCGHYVAHILKDGRWAIFNDNKVGASIDPPKEMGYLYFFERL*

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