Glyma06g39760 - SoyBase

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Report for Sequence Feature Glyma06g39760

Feature Type:	gene_model
Chromosome:	Gm06
Start:	42662481
stop:	42670185
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g39760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G20900	AT	Annotation by Michelle Graham. TAIR10: diacylglycerol kinase 5 \| chr2:8989794-8992798 REVERSE LENGTH=491	SoyBase	E_val: 0	ISS
GO:0007205	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein kinase C-activating G-protein coupled receptor signaling pathway	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0004143	GO-mf	Annotation by Michelle Graham. GO Molecular Function: diacylglycerol kinase activity	SoyBase	N/A	ISS
PTHR11255	Panther	DIACYLGLYCEROL KINASE	JGI		ISS
PTHR11255:SF1	Panther	MYOSIN HEAVY CHAIN KINASDE	JGI		ISS
PF00609	PFAM	Diacylglycerol kinase accessory domain	JGI		ISS
PF00781	PFAM	Diacylglycerol kinase catalytic domain	JGI		ISS
UniRef100_B9SIF7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Diacylglycerol kinase, alpha, putative n=1 Tax=Ricinus communis RepID=B9SIF7_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339E88	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339E88 related cluster n=1 Tax=unknown RepID=UPI0002339E88	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g39760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g39760

Paralog	Evidence	Comments
Glyma12g22280	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g39760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g254900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g39760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g39760

Limit To All Plant Sequences

>Glyma06g39760.1   sequence type=CDS   gene model=Glyma06g39760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGATGGTAATTATGATATGAGGGAGTTCTGTATTCCTGATTACATATTAGTGCCGGGATCTGAGGTGAAAAGTGTTTCGCATGTACCTGCTTGTCCAGTGATTGCTTTCATAAACACCAAAAGTGGTGGCCAGCTTGGAGGGGAGCTTCTTGTTTCCTATAGTACACTTCTTAACAAAAACCAGGTTTTTGATTTGGGGAAGAATGCTCCGGATAAGGTTCTGCAGAAGCTTTATGCTACATTGGAAACGCTCAAGCACAATGGAGATAATTTTGCAGCTGAAATTCAGAATAGATTGAGGATAATTGTTGCGGGTGGAGATGGTACTGCCAGCTGGCTTCTTGGAGTTGTATCTGACCTTAAATTACCTCAGCCGCCACCAATTGCAACGGTGCCATTGGGGACGGGAAATAATCTTCCCTTTGCATTTGGATGGGGAAAGAAAAATCCAACAACGGATCTCCAATCAGTGGTGTCATTCCTAAATCATGTAAAAGGGGCAAGGGAAATGAAAATAGACAGTTGGCATATCATAATGAGAATTAAGGCTCCAAAAGAAGGTTCATGTGACCCTATTGCACCCCTTGACCTGCCTCATGCTATGCATGCATTTAATCGTGTCTCTTCAACAGATAAACTAAACTTGAAAGGTTACCACACTTACCGCGGGGGATTTTGGAACTACTTTAGCATGGGAATGGATGCTCAAGTATCTTATGCATTTCATTCTGAGAGGAAGTTACATCCAGAAAAGTTTAAAAATCAGTTATACAATCAGAGTACCTATCTGAAGCTTGGATGTACACAAGGATGGTTCTTTGGTTCTCTGTTTCAATCTGCTTCGCGGAATATTGCTCAATTGGCAAAGGTTAAGATAATGAAAAAAGGTCATTGGGAAGATCTCCACATACCTCGCAGTATAAAGTCAATAGTTTGCCTCAACTTGCCCAGCTTTTCTGGTGGACTCAATCCCTGGGGAACACCAAATAGGAGGAAATCAATTTATAGGGACCTGACTCTCCCCTACGTGGATGATGGCCTATTTGAGGTAGTTGGTTTTAGAGATGCTTGGCATGGTCTTGTTTTGCTGGCACCAAAGGGACACGGGACTCGTTTGGCACAGACAAGCAGAATCCGTTTTGAGTTTCATAAGGGTGCAGCTGATTGCACATTCATGAGAATTGATGGAGAGCCATGGAAGCAACCCCTTCCAAAAGATGATGACACAGTTGTTGTTGAGATATCACACCATGGCCAAGTTAGCATGCTGGCCACCCCATTGTGCCGTTCTAAGAGTGTGAATGATCCTTCCTCCCCTTCCGTTGACCGCGAAGAAGATGATAGCAGTGAAGAAGAACTATCAGAAGATTGGGAAGAACGGCGCAAATTTGGGGCAGCCGAAACATTCAAATATCCAGAGGGAATTGATATAGCTCAGGTAAGTTAG

Predicted protein sequences of Glyma06g39760

Limit To All Plant Sequences

>Glyma06g39760.1   sequence type=predicted peptide   gene model=Glyma06g39760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGDGNYDMREFCIPDYILVPGSEVKSVSHVPACPVIAFINTKSGGQLGGELLVSYSTLLNKNQVFDLGKNAPDKVLQKLYATLETLKHNGDNFAAEIQNRLRIIVAGGDGTASWLLGVVSDLKLPQPPPIATVPLGTGNNLPFAFGWGKKNPTTDLQSVVSFLNHVKGAREMKIDSWHIIMRIKAPKEGSCDPIAPLDLPHAMHAFNRVSSTDKLNLKGYHTYRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFKNQLYNQSTYLKLGCTQGWFFGSLFQSASRNIAQLAKVKIMKKGHWEDLHIPRSIKSIVCLNLPSFSGGLNPWGTPNRRKSIYRDLTLPYVDDGLFEVVGFRDAWHGLVLLAPKGHGTRLAQTSRIRFEFHKGAADCTFMRIDGEPWKQPLPKDDDTVVVEISHHGQVSMLATPLCRSKSVNDPSSPSVDREEDDSSEEELSEDWEERRKFGAAETFKYPEGIDIAQVS*

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