SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G15290 | AT | Annotation by Michelle Graham. TAIR10: 3-hydroxyacyl-CoA dehydrogenase family protein | chr3:5145054-5146613 FORWARD LENGTH=294 | SoyBase | E_val: 2.00E-162 | ISS |
| GO:0006631 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid metabolic process | SoyBase | N/A | ISS |
| GO:0009853 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photorespiration | SoyBase | N/A | ISS |
| GO:0046685 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to arsenic-containing substance | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005777 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: peroxisome | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003857 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3-hydroxyacyl-CoA dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0008691 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3-hydroxybutyryl-CoA dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016616 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | SoyBase | N/A | ISS |
| GO:0050662 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: coenzyme binding | SoyBase | N/A | ISS |
| GO:0070403 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NAD+ binding | SoyBase | N/A | ISS |
| KOG2304 | KOG | 3-hydroxyacyl-CoA dehydrogenase | JGI | ISS | |
| PTHR23309 | Panther | 3-HYDROXYACYL-COA DEHYROGENASE | JGI | ISS | |
| PF00725 | PFAM | 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain | JGI | ISS | |
| PF02737 | PFAM | 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain | JGI | ISS | |
| UniRef100_B0M194 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Peroxisomal 3-hydroxyacyl-CoA dehydrogenase-like protein n=1 Tax=Glycine max RepID=B0M194_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_B0M194 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Peroxisomal 3-hydroxyacyl-CoA dehydrogenase-like protein n=1 Tax=Glycine max RepID=B0M194_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g39750 not represented in the dataset |
Glyma06g39750 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g254700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g39750.1 sequence type=CDS gene model=Glyma06g39750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAGCGAAACCTAGCTATCATCATCATCACAGAAGAACAACAACAGAGGAAAAAAGAAAAAGAAAAATGTTAGAGGTGAAGAGAATCGGTGTGGTGGGGAGTGGCCAAATGGGATCGGGAATAGCCCAAGTCGCTGCCATGCACGGCATCGACGTTTGGCTTCACGACCTCGACCCTCAAGCTCTCTCCAAAGCCTCCTCTTCCATCTCTTCCTCCATCAACCGTTTCGTTTCCAAAAACCACATCTCTCAGGTTGCGGGTGCTGATGCTTTGAAACGACTGCGTCTCACGACGGATTTGGAGGATTTACAGCTAGCGGATTTGATCATTGAGGCGATTGTGGAATCCGAAGATGTGAAAAAGAGTTTGTTTGCGCAACTCGATAGGATTGCCAAGAGTTCTGCGATTTTGGCGTCCAACACCAGTTCCATTTCCGTCACGCGTCTAGCCACCTCTACCAGCAGGCCACGTCAGGTGATAGGAATGCATTTTATGAACCCACCTCCTGTGATGAAATTGATTGAGATTGTACGAGGTGCAGACACTTCTGAGGAGACATTCGTTGCTACGAAAGCATTGTCAGAGAGGCTTGGCAAGGTAGTGATAACCTCCCATGATTATTCAGGCTTCATAGTGAATCGAATCCTTATGCCTATGATAAATGAAGCATTTTTTGCTCTCTACACTGGTGTTGCAACCAAAGAGGATATTGACACAGGAATGAAGCTGGGTACTAACCATCCAATGGGTCCTTTAGAGCTTGCAGACTTCATTGGATTGGATGTGTGCTTGTCAATAATGAGAGTTCTTCATGCTGGCCTTGGTGACAACAAATATGCACCTTGCCCTCTACTTGTGCAGTATGTTGATGCTGGAAGACTTGGAAGAAAACGAGGTATTGGTGTGTATGAATATAGTAAAGATCCAAGGTCTACAAAATCATCTTCCCGTCTCTAA
>Glyma06g39750.1 sequence type=predicted peptide gene model=Glyma06g39750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKAKPSYHHHHRRTTTEEKRKRKMLEVKRIGVVGSGQMGSGIAQVAAMHGIDVWLHDLDPQALSKASSSISSSINRFVSKNHISQVAGADALKRLRLTTDLEDLQLADLIIEAIVESEDVKKSLFAQLDRIAKSSAILASNTSSISVTRLATSTSRPRQVIGMHFMNPPPVMKLIEIVRGADTSEETFVATKALSERLGKVVITSHDYSGFIVNRILMPMINEAFFALYTGVATKEDIDTGMKLGTNHPMGPLELADFIGLDVCLSIMRVLHAGLGDNKYAPCPLLVQYVDAGRLGRKRGIGVYEYSKDPRSTKSSSRL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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