Glyma06g39710 - SoyBase

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Report for Sequence Feature Glyma06g39710

Feature Type:	gene_model
Chromosome:	Gm06
Start:	42500788
stop:	42505968
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g39710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G05840	AT	Annotation by Michelle Graham. TAIR10: 20S proteasome subunit PAA2 \| chr2:2234226-2236053 FORWARD LENGTH=246	SoyBase	E_val: 2.00E-148	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0051603	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis involved in cellular protein catabolic process	SoyBase	N/A	ISS
GO:0000502	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005839	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proteasome core complex	SoyBase	N/A	ISS
GO:0019773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proteasome core complex, alpha-subunit complex	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0004175	GO-mf	Annotation by Michelle Graham. GO Molecular Function: endopeptidase activity	SoyBase	N/A	ISS
GO:0004298	GO-mf	Annotation by Michelle Graham. GO Molecular Function: threonine-type endopeptidase activity	SoyBase	N/A	ISS
GO:0008233	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptidase activity	SoyBase	N/A	ISS
KOG0182	KOG	20S proteasome, regulatory subunit alpha type PSMA6/SCL1	JGI		ISS
PTHR11599	Panther	PROTEASOME SUBUNIT ALPHA/BETA	JGI		ISS
PTHR11599:SF11	Panther	PROTEASOME BETA/DELTA SUBUNIT	JGI		ISS
PF00227	PFAM	Proteasome subunit	JGI		ISS
PF10584	PFAM	Proteasome subunit A N-terminal signature	JGI		ISS
UniRef100_I1LSZ7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Proteasome subunit alpha type n=2 Tax=Glycine max RepID=I1LSZ7_SOYBN	SoyBase	E_val: 8.00E-159	ISS
UniRef100_I1LSZ7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Proteasome subunit alpha type n=2 Tax=Glycine max RepID=I1LSZ7_SOYBN	SoyBase	E_val: 8.00E-159	ISS

Expression Patterns of Glyma06g39710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g39710

Paralog	Evidence	Comments
Glyma12g22340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g39710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g254200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g39710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g39710

Limit To All Plant Sequences

>Glyma06g39710.2   sequence type=transcript   gene model=Glyma06g39710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCATGTTTTCTTGAGTAGGAAGTTGAGATCGATGCTTAAAGGAGTTAAAGAGTAAAAGCACCGTCTCCGTCTCCACTCTCGGCTTCTTCTTCGTTGCGCTTTTTCCCAAAACCAATTGCATCACTCTCGTCCGTTACCGCCGCTGCCCTAGACCACCGCAAGCGACGTCGCACACCGCCTTCATCCGTTAGGGCAAAAATGAGTCGAGGAAGTGGAGGTGGATACGATCGTCACATCACTATTTTCTCCCCTGAAGGACGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTGAAGGCTGCAGGAATCACCTCGATTGGTGTCCGAGGAAAGGATTCAATTTGTGTCGTTACTCAGAAGAAGGTTCCGGATAAGCTTTTGGACAACACAAGTGTTACACACCTCTTTCCAATCACCAAGTACCTTGGATTATTGGCTACTGGCATGACAGCTGATGCTAGGACACTGGTCCAACAAGCAAGAAATGAAGCAGCTGAGTTTCGCTTTACATATGGATATGAGATGCCTGTAGATGTATTAGCTAAATGGATTGCAGATAAATCACAAGTCTATACTCAACATGCTTATATGAGACCACTCGGAGTAGTTGCTATGGTTTTGGGTATTGATGATGAATATGGACCTCAGCTATACAAATGTGATCCAGCTGGTCATTACTTTGGTCACAAGGCAACAAGTGCTGGATTGAAGGACCAAGAGGCAATTAATTTCTTGGAAAAGAAGATGAAGAATGACCCTTCATTTACATATGAGGAGACGGTTCAGACTGCCATTTCTGCCCTGCAATCAGTTCTTCAGGAGGATTTTAAGGCCACTGAGATTGAGGTAGAACTTTATTTTAAAGCTTACAGACCTTTATATGACCCCATGTTTATTGAAATTGGTAAAATGATCCATATTTTATTTTTAAAAAGTATTGCAGGATGTCATTCTTGATTTAGTTCTTGAAAGGCCAAAACATTTATTGTTCTTTCTCATTAACAAAAGTCATGCATTTTTGTCATGCTGCCTAGTTTGTTTTCTTTTTGAGTTTATGACACTCTTTCATTTGTCTTCAAGTTAGGCAACTCAGGTTACACCATTTTTTTTTCATCACTCACTACTCCATTAGCTTTCCTCGTAGGTTATGAATACACAAGAGTCTATAATTTTTTATTCTCATTGTTTTTGTGATTCTCTAATGTTTCAATTGATTGTTGATTCTAGTGCTTAGTAATATGGACTAGTAATAACTCAAATATGTAATGTTAGCTGTTCAATGGCATAGATTAGTATGTTGACAATGATTAAATTTTT

Coding sequences of Glyma06g39710

Limit To All Plant Sequences

>Glyma06g39710.1   sequence type=CDS   gene model=Glyma06g39710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCGAGGAAGTGGAGGTGGATACGATCGTCACATCACTATTTTCTCCCCTGAAGGACGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTGAAGGCTGCAGGAATCACCTCGATTGGTGTCCGAGGAAAGGATTCAATTTGTGTCGTTACTCAGAAGAAGGTTCCGGATAAGCTTTTGGACAACACAAGTGTTACACACCTCTTTCCAATCACCAAGTACCTTGGATTATTGGCTACTGGCATGACAGCTGATGCTAGGACACTGGTCCAACAAGCAAGAAATGAAGCAGCTGAGTTTCGCTTTACATATGGATATGAGATGCCTGTAGATGTATTAGCTAAATGGATTGCAGATAAATCACAAGTCTATACTCAACATGCTTATATGAGACCACTCGGAGTAGTTGCTATGGTTTTGGGTATTGATGATGAATATGGACCTCAGCTATACAAATGTGATCCAGCTGGTCATTACTTTGGTCACAAGGCAACAAGTGCTGGATTGAAGGACCAAGAGGCAATTAATTTCTTGGAAAAGAAGATGAAGAATGACCCTTCATTTACATATGAGGAGACGGTTCAGACTGCCATTTCTGCCCTGCAATCAGTTCTTCAGGAGGATTTTAAGGCCACTGAGATTGAGGTTGGAGTGGTGCGGAAGGATAATCCAGAATTCAGAGTTTTAACCACCGACGAAATTGATGAGCACTTGACTGCAATAAGTGAGCGTGACTGA

>Glyma06g39710.2   sequence type=CDS   gene model=Glyma06g39710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCGAGGAAGTGGAGGTGGATACGATCGTCACATCACTATTTTCTCCCCTGAAGGACGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTGAAGGCTGCAGGAATCACCTCGATTGGTGTCCGAGGAAAGGATTCAATTTGTGTCGTTACTCAGAAGAAGGTTCCGGATAAGCTTTTGGACAACACAAGTGTTACACACCTCTTTCCAATCACCAAGTACCTTGGATTATTGGCTACTGGCATGACAGCTGATGCTAGGACACTGGTCCAACAAGCAAGAAATGAAGCAGCTGAGTTTCGCTTTACATATGGATATGAGATGCCTGTAGATGTATTAGCTAAATGGATTGCAGATAAATCACAAGTCTATACTCAACATGCTTATATGAGACCACTCGGAGTAGTTGCTATGGTTTTGGGTATTGATGATGAATATGGACCTCAGCTATACAAATGTGATCCAGCTGGTCATTACTTTGGTCACAAGGCAACAAGTGCTGGATTGAAGGACCAAGAGGCAATTAATTTCTTGGAAAAGAAGATGAAGAATGACCCTTCATTTACATATGAGGAGACGGTTCAGACTGCCATTTCTGCCCTGCAATCAGTTCTTCAGGAGGATTTTAAGGCCACTGAGATTGAGGTAGAACTTTATTTTAAAGCTTACAGACCTTTATATGACCCCATGTTTATTGAAATTGGTAAAATGATCCATATTTTATTTTTAAAAAGTATTGCAGGATGTCATTCTTGA

Predicted protein sequences of Glyma06g39710

Limit To All Plant Sequences

>Glyma06g39710.1   sequence type=predicted peptide   gene model=Glyma06g39710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSICVVTQKKVPDKLLDNTSVTHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFTYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDEYGPQLYKCDPAGHYFGHKATSAGLKDQEAINFLEKKMKNDPSFTYEETVQTAISALQSVLQEDFKATEIEVGVVRKDNPEFRVLTTDEIDEHLTAISERD*

>Glyma06g39710.2   sequence type=predicted peptide   gene model=Glyma06g39710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRGSGGGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSICVVTQKKVPDKLLDNTSVTHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFTYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLGIDDEYGPQLYKCDPAGHYFGHKATSAGLKDQEAINFLEKKMKNDPSFTYEETVQTAISALQSVLQEDFKATEIEVELYFKAYRPLYDPMFIEIGKMIHILFLKSIAGCHS*

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