Glyma06g39700 - SoyBase

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Report for Sequence Feature Glyma06g39700

Feature Type:	gene_model
Chromosome:	Gm06
Start:	42494984
stop:	42499880
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g39700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G54290	AT	Annotation by Michelle Graham. TAIR10: cytochrome c biogenesis protein family \| chr5:22051097-22053923 FORWARD LENGTH=355	SoyBase	E_val: 2.00E-141	ISS
GO:0010190	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytochrome b6f complex assembly	SoyBase	N/A	ISS
GO:0017004	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytochrome complex assembly	SoyBase	N/A	ISS
GO:0045454	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0055035	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid thylakoid membrane	SoyBase	N/A	ISS
PF02683	PFAM	Cytochrome C biogenesis protein transmembrane region	JGI		ISS
UniRef100_I1KE50	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KE50_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q7XY14	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: C-type cytochrome biogenesis protein n=1 Tax=Glycine max RepID=Q7XY14_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g39700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g39700

Paralog	Evidence	Comments
Glyma12g22350	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g39700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g254100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g39700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g39700

Limit To All Plant Sequences

>Glyma06g39700.2   sequence type=transcript   gene model=Glyma06g39700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCAAAACAAAATTGCAACAACAATTGAGCTTCCGTTGAAGAAATAATTGTTATTTTTTTTTTCTTCTTCCTGGATTTTGATTTTTTTTTATTATCTAATTGTACGTTCAGATGAGTTTGAGTATGAGCTTGTGCGGTAATTACAGTCTTCAGCTTCAAAATCGCAGAATCGTAAGCTGCAATCTTCACCAGGATGGCAGGCATATTGTTCCCATCAATACGCACCAAAAACCTTCCAAACCTGAAAAGTGTCTTCGGTCCAAATGGAAGATTAATGGCAATAACATTGGGACATGCATTGGAGTCATGACAGTGGCACACTTGGTTGCTCCAGTCGCTGCAAAAGCTGAAGTGGCTGCTTCTATTTATGCTTTGGCTGATGGAAGCCTCGGTGACTGGTTTGGAGGCTTTCTATTTTCAGCTGGACAGCAGGCCAATGAAGCTGTTCAGGGCCAATTAACCTCTCTCAGTTTCACTAGTTTGGCTGTAATTTATGGGGCTGGGCTTGTTACCAGCCTTTCTCCCTGTACACTTAGTGTCTTACCACTGACCCTTGGTTACATTGGGGCATTTGGCTCTGGCAAAAGCAGAGCACAGGTTGTAGGAGATTCCATTGCATTCTCCTTAGGCCTTGCAACCACGTTAGCACTGTTGGGTGTAGGAGCTTCATTTGCAGGAAAGGCTTATGGACAGATTGGCCAAGGATTACCTTTGGCAGCTTCTGGTTTGGCTATAATTATGGGTCTGAATCTTCTTGAGATCATTGAATTACGGCTCCCCTCATTCTTTGACAGTTTTGATCCACGTGCAGCAGCTGCCAATTTCCCATCCAGTGTGCAAGCATACCTCGCCGGGCTTACATTTGCCTTAGCTGCCTCACCTTGTAGTACACCTGTCTTGGCCACCCTTCTGGGATATGTTGCTGCATCCAAGGACCCGGTGATTGGAGGCAGCTTACTTTTAACATACACAACTGGCTATGTTTCTCCTTTACTCTTGGCTGCTTCTTTTGCTGGAGCACTACAGAGCTTGCTCTCATTCCGCAAGTTCTCGGCATGGATCAATCCTATAAGCGGAGCAATGCTGTTAGGTGGTGGTGTATATACGTTCTTAGATAGGCTGTTCCCAGTCACAATGGTGATGTAGAAAATCTCTTGGCTCTTAACATGCTGTGATATTTTACATTAACAGTTCAATGTATATATGTCATACAAGTATTCAATTCAATTGGAATAGAAATCCAAATGAGACTATTGCATACCACAGCCGAATTCTTCTTCATCCAAATACATAATATATTTGTTTTGGCGTGCAAAATATTGCTATATTGGTAGGAAACTTACTGCATTGGACCATTTATTAACTTCAACGGAGCAAAATTTTGATAATGATAATCACAATGACCAAA

Coding sequences of Glyma06g39700

Limit To All Plant Sequences

>Glyma06g39700.1   sequence type=CDS   gene model=Glyma06g39700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCGGGGTTTGGATTTTTTTCATTCCGCATAGGTTCCGTGTTCCAAACAATGAGTTTGAGTATGAGCTTGTGCGGTAATTACAGTCTTCAGCTTCAAAATCGCAGAATCGTAAGCTGCAATCTTCACCAGGATGGCAGGCATATTGTTCCCATCAATACGCACCAAAAACCTTCCAAACCTGAAAAGTGTCTTCGGTCCAAATGGAAGATTAATGGCAATAACATTGGGACATGCATTGGAGTCATGACAGTGGCACACTTGGTTGCTCCAGTCGCTGCAAAAGCTGAAGTGGCTGCTTCTATTTATGCTTTGGCTGATGGAAGCCTCGGTGACTGGTTTGGAGGCTTTCTATTTTCAGCTGGACAGCAGGCCAATGAAGCTGTTCAGGGCCAATTAACCTCTCTCAGTTTCACTAGTTTGGCTGTAATTTATGGGGCTGGGCTTGTTACCAGCCTTTCTCCCTGTACACTTAGTGTCTTACCACTGACCCTTGGTTACATTGGGGCATTTGGCTCTGGCAAAAGCAGAGCACAGGTTGTAGGAGATTCCATTGCATTCTCCTTAGGCCTTGCAACCACGTTAGCACTGTTGGGTGTAGGAGCTTCATTTGCAGGAAAGGCTTATGGACAGATTGGCCAAGGATTACCTTTGGCAGCTTCTGGTTTGGCTATAATTATGGGTCTGAATCTTCTTGAGATCATTGAATTACGGCTCCCCTCATTCTTTGACAGTTTTGATCCACGTGCAGCAGCTGCCAATTTCCCATCCAGTGTGCAAGCATACCTCGCCGGGCTTACATTTGCCTTAGCTGCCTCACCTTGTAGTACACCTGTCTTGGCCACCCTTCTGGGATATGTTGCTGCATCCAAGGACCCGGTGATTGGAGGCAGCTTACTTTTAACATACACAACTGGCTATGTTTCTCCTTTACTCTTGGCTGCTTCTTTTGCTGGAGCACTACAGAGCTTGCTCTCATTCCGCAAGTTCTCGGCATGGATCAATCCTATAAGCGGAGCAATGCTGTTAGGTGGTGGTGTATATACGTTCTTAGATAGGCTGTTCCCAGTCACAATGGTGATGTAG

>Glyma06g39700.2   sequence type=CDS   gene model=Glyma06g39700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTTGAGTATGAGCTTGTGCGGTAATTACAGTCTTCAGCTTCAAAATCGCAGAATCGTAAGCTGCAATCTTCACCAGGATGGCAGGCATATTGTTCCCATCAATACGCACCAAAAACCTTCCAAACCTGAAAAGTGTCTTCGGTCCAAATGGAAGATTAATGGCAATAACATTGGGACATGCATTGGAGTCATGACAGTGGCACACTTGGTTGCTCCAGTCGCTGCAAAAGCTGAAGTGGCTGCTTCTATTTATGCTTTGGCTGATGGAAGCCTCGGTGACTGGTTTGGAGGCTTTCTATTTTCAGCTGGACAGCAGGCCAATGAAGCTGTTCAGGGCCAATTAACCTCTCTCAGTTTCACTAGTTTGGCTGTAATTTATGGGGCTGGGCTTGTTACCAGCCTTTCTCCCTGTACACTTAGTGTCTTACCACTGACCCTTGGTTACATTGGGGCATTTGGCTCTGGCAAAAGCAGAGCACAGGTTGTAGGAGATTCCATTGCATTCTCCTTAGGCCTTGCAACCACGTTAGCACTGTTGGGTGTAGGAGCTTCATTTGCAGGAAAGGCTTATGGACAGATTGGCCAAGGATTACCTTTGGCAGCTTCTGGTTTGGCTATAATTATGGGTCTGAATCTTCTTGAGATCATTGAATTACGGCTCCCCTCATTCTTTGACAGTTTTGATCCACGTGCAGCAGCTGCCAATTTCCCATCCAGTGTGCAAGCATACCTCGCCGGGCTTACATTTGCCTTAGCTGCCTCACCTTGTAGTACACCTGTCTTGGCCACCCTTCTGGGATATGTTGCTGCATCCAAGGACCCGGTGATTGGAGGCAGCTTACTTTTAACATACACAACTGGCTATGTTTCTCCTTTACTCTTGGCTGCTTCTTTTGCTGGAGCACTACAGAGCTTGCTCTCATTCCGCAAGTTCTCGGCATGGATCAATCCTATAAGCGGAGCAATGCTGTTAGGTGGTGGTGTATATACGTTCTTAGATAGGCTGTTCCCAGTCACAATGGTGATGTAG

Predicted protein sequences of Glyma06g39700

Limit To All Plant Sequences

>Glyma06g39700.1   sequence type=predicted peptide   gene model=Glyma06g39700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
SGFGFFSFRIGSVFQTMSLSMSLCGNYSLQLQNRRIVSCNLHQDGRHIVPINTHQKPSKPEKCLRSKWKINGNNIGTCIGVMTVAHLVAPVAAKAEVAASIYALADGSLGDWFGGFLFSAGQQANEAVQGQLTSLSFTSLAVIYGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQVVGDSIAFSLGLATTLALLGVGASFAGKAYGQIGQGLPLAASGLAIIMGLNLLEIIELRLPSFFDSFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPVIGGSLLLTYTTGYVSPLLLAASFAGALQSLLSFRKFSAWINPISGAMLLGGGVYTFLDRLFPVTMVM*

>Glyma06g39700.2   sequence type=predicted peptide   gene model=Glyma06g39700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLSMSLCGNYSLQLQNRRIVSCNLHQDGRHIVPINTHQKPSKPEKCLRSKWKINGNNIGTCIGVMTVAHLVAPVAAKAEVAASIYALADGSLGDWFGGFLFSAGQQANEAVQGQLTSLSFTSLAVIYGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQVVGDSIAFSLGLATTLALLGVGASFAGKAYGQIGQGLPLAASGLAIIMGLNLLEIIELRLPSFFDSFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPVIGGSLLLTYTTGYVSPLLLAASFAGALQSLLSFRKFSAWINPISGAMLLGGGVYTFLDRLFPVTMVM*

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