SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G54290 | AT | Annotation by Michelle Graham. TAIR10: cytochrome c biogenesis protein family | chr5:22051097-22053923 FORWARD LENGTH=355 | SoyBase | E_val: 2.00E-141 | ISS |
| GO:0010190 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytochrome b6f complex assembly | SoyBase | N/A | ISS |
| GO:0017004 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytochrome complex assembly | SoyBase | N/A | ISS |
| GO:0045454 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009534 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0055035 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid thylakoid membrane | SoyBase | N/A | ISS |
| PF02683 | PFAM | Cytochrome C biogenesis protein transmembrane region | JGI | ISS | |
| UniRef100_I1KE50 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KE50_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q7XY14 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: C-type cytochrome biogenesis protein n=1 Tax=Glycine max RepID=Q7XY14_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g39700 not represented in the dataset |
Glyma06g39700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g22350 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g254100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g39700.2 sequence type=transcript gene model=Glyma06g39700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCAAAACAAAATTGCAACAACAATTGAGCTTCCGTTGAAGAAATAATTGTTATTTTTTTTTTCTTCTTCCTGGATTTTGATTTTTTTTTATTATCTAATTGTACGTTCAGATGAGTTTGAGTATGAGCTTGTGCGGTAATTACAGTCTTCAGCTTCAAAATCGCAGAATCGTAAGCTGCAATCTTCACCAGGATGGCAGGCATATTGTTCCCATCAATACGCACCAAAAACCTTCCAAACCTGAAAAGTGTCTTCGGTCCAAATGGAAGATTAATGGCAATAACATTGGGACATGCATTGGAGTCATGACAGTGGCACACTTGGTTGCTCCAGTCGCTGCAAAAGCTGAAGTGGCTGCTTCTATTTATGCTTTGGCTGATGGAAGCCTCGGTGACTGGTTTGGAGGCTTTCTATTTTCAGCTGGACAGCAGGCCAATGAAGCTGTTCAGGGCCAATTAACCTCTCTCAGTTTCACTAGTTTGGCTGTAATTTATGGGGCTGGGCTTGTTACCAGCCTTTCTCCCTGTACACTTAGTGTCTTACCACTGACCCTTGGTTACATTGGGGCATTTGGCTCTGGCAAAAGCAGAGCACAGGTTGTAGGAGATTCCATTGCATTCTCCTTAGGCCTTGCAACCACGTTAGCACTGTTGGGTGTAGGAGCTTCATTTGCAGGAAAGGCTTATGGACAGATTGGCCAAGGATTACCTTTGGCAGCTTCTGGTTTGGCTATAATTATGGGTCTGAATCTTCTTGAGATCATTGAATTACGGCTCCCCTCATTCTTTGACAGTTTTGATCCACGTGCAGCAGCTGCCAATTTCCCATCCAGTGTGCAAGCATACCTCGCCGGGCTTACATTTGCCTTAGCTGCCTCACCTTGTAGTACACCTGTCTTGGCCACCCTTCTGGGATATGTTGCTGCATCCAAGGACCCGGTGATTGGAGGCAGCTTACTTTTAACATACACAACTGGCTATGTTTCTCCTTTACTCTTGGCTGCTTCTTTTGCTGGAGCACTACAGAGCTTGCTCTCATTCCGCAAGTTCTCGGCATGGATCAATCCTATAAGCGGAGCAATGCTGTTAGGTGGTGGTGTATATACGTTCTTAGATAGGCTGTTCCCAGTCACAATGGTGATGTAGAAAATCTCTTGGCTCTTAACATGCTGTGATATTTTACATTAACAGTTCAATGTATATATGTCATACAAGTATTCAATTCAATTGGAATAGAAATCCAAATGAGACTATTGCATACCACAGCCGAATTCTTCTTCATCCAAATACATAATATATTTGTTTTGGCGTGCAAAATATTGCTATATTGGTAGGAAACTTACTGCATTGGACCATTTATTAACTTCAACGGAGCAAAATTTTGATAATGATAATCACAATGACCAAA
>Glyma06g39700.1 sequence type=CDS gene model=Glyma06g39700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCGGGGTTTGGATTTTTTTCATTCCGCATAGGTTCCGTGTTCCAAACAATGAGTTTGAGTATGAGCTTGTGCGGTAATTACAGTCTTCAGCTTCAAAATCGCAGAATCGTAAGCTGCAATCTTCACCAGGATGGCAGGCATATTGTTCCCATCAATACGCACCAAAAACCTTCCAAACCTGAAAAGTGTCTTCGGTCCAAATGGAAGATTAATGGCAATAACATTGGGACATGCATTGGAGTCATGACAGTGGCACACTTGGTTGCTCCAGTCGCTGCAAAAGCTGAAGTGGCTGCTTCTATTTATGCTTTGGCTGATGGAAGCCTCGGTGACTGGTTTGGAGGCTTTCTATTTTCAGCTGGACAGCAGGCCAATGAAGCTGTTCAGGGCCAATTAACCTCTCTCAGTTTCACTAGTTTGGCTGTAATTTATGGGGCTGGGCTTGTTACCAGCCTTTCTCCCTGTACACTTAGTGTCTTACCACTGACCCTTGGTTACATTGGGGCATTTGGCTCTGGCAAAAGCAGAGCACAGGTTGTAGGAGATTCCATTGCATTCTCCTTAGGCCTTGCAACCACGTTAGCACTGTTGGGTGTAGGAGCTTCATTTGCAGGAAAGGCTTATGGACAGATTGGCCAAGGATTACCTTTGGCAGCTTCTGGTTTGGCTATAATTATGGGTCTGAATCTTCTTGAGATCATTGAATTACGGCTCCCCTCATTCTTTGACAGTTTTGATCCACGTGCAGCAGCTGCCAATTTCCCATCCAGTGTGCAAGCATACCTCGCCGGGCTTACATTTGCCTTAGCTGCCTCACCTTGTAGTACACCTGTCTTGGCCACCCTTCTGGGATATGTTGCTGCATCCAAGGACCCGGTGATTGGAGGCAGCTTACTTTTAACATACACAACTGGCTATGTTTCTCCTTTACTCTTGGCTGCTTCTTTTGCTGGAGCACTACAGAGCTTGCTCTCATTCCGCAAGTTCTCGGCATGGATCAATCCTATAAGCGGAGCAATGCTGTTAGGTGGTGGTGTATATACGTTCTTAGATAGGCTGTTCCCAGTCACAATGGTGATGTAG >Glyma06g39700.2 sequence type=CDS gene model=Glyma06g39700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTTTGAGTATGAGCTTGTGCGGTAATTACAGTCTTCAGCTTCAAAATCGCAGAATCGTAAGCTGCAATCTTCACCAGGATGGCAGGCATATTGTTCCCATCAATACGCACCAAAAACCTTCCAAACCTGAAAAGTGTCTTCGGTCCAAATGGAAGATTAATGGCAATAACATTGGGACATGCATTGGAGTCATGACAGTGGCACACTTGGTTGCTCCAGTCGCTGCAAAAGCTGAAGTGGCTGCTTCTATTTATGCTTTGGCTGATGGAAGCCTCGGTGACTGGTTTGGAGGCTTTCTATTTTCAGCTGGACAGCAGGCCAATGAAGCTGTTCAGGGCCAATTAACCTCTCTCAGTTTCACTAGTTTGGCTGTAATTTATGGGGCTGGGCTTGTTACCAGCCTTTCTCCCTGTACACTTAGTGTCTTACCACTGACCCTTGGTTACATTGGGGCATTTGGCTCTGGCAAAAGCAGAGCACAGGTTGTAGGAGATTCCATTGCATTCTCCTTAGGCCTTGCAACCACGTTAGCACTGTTGGGTGTAGGAGCTTCATTTGCAGGAAAGGCTTATGGACAGATTGGCCAAGGATTACCTTTGGCAGCTTCTGGTTTGGCTATAATTATGGGTCTGAATCTTCTTGAGATCATTGAATTACGGCTCCCCTCATTCTTTGACAGTTTTGATCCACGTGCAGCAGCTGCCAATTTCCCATCCAGTGTGCAAGCATACCTCGCCGGGCTTACATTTGCCTTAGCTGCCTCACCTTGTAGTACACCTGTCTTGGCCACCCTTCTGGGATATGTTGCTGCATCCAAGGACCCGGTGATTGGAGGCAGCTTACTTTTAACATACACAACTGGCTATGTTTCTCCTTTACTCTTGGCTGCTTCTTTTGCTGGAGCACTACAGAGCTTGCTCTCATTCCGCAAGTTCTCGGCATGGATCAATCCTATAAGCGGAGCAATGCTGTTAGGTGGTGGTGTATATACGTTCTTAGATAGGCTGTTCCCAGTCACAATGGTGATGTAG
>Glyma06g39700.1 sequence type=predicted peptide gene model=Glyma06g39700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high SGFGFFSFRIGSVFQTMSLSMSLCGNYSLQLQNRRIVSCNLHQDGRHIVPINTHQKPSKPEKCLRSKWKINGNNIGTCIGVMTVAHLVAPVAAKAEVAASIYALADGSLGDWFGGFLFSAGQQANEAVQGQLTSLSFTSLAVIYGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQVVGDSIAFSLGLATTLALLGVGASFAGKAYGQIGQGLPLAASGLAIIMGLNLLEIIELRLPSFFDSFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPVIGGSLLLTYTTGYVSPLLLAASFAGALQSLLSFRKFSAWINPISGAMLLGGGVYTFLDRLFPVTMVM* >Glyma06g39700.2 sequence type=predicted peptide gene model=Glyma06g39700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLSMSLCGNYSLQLQNRRIVSCNLHQDGRHIVPINTHQKPSKPEKCLRSKWKINGNNIGTCIGVMTVAHLVAPVAAKAEVAASIYALADGSLGDWFGGFLFSAGQQANEAVQGQLTSLSFTSLAVIYGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQVVGDSIAFSLGLATTLALLGVGASFAGKAYGQIGQGLPLAASGLAIIMGLNLLEIIELRLPSFFDSFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPVIGGSLLLTYTTGYVSPLLLAASFAGALQSLLSFRKFSAWINPISGAMLLGGGVYTFLDRLFPVTMVM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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