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Report for Sequence Feature Glyma06g39690
Feature Type: gene_model
Chromosome: Gm06
Start: 42487886
stop: 42494528
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g39690
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G54310 AT
Annotation by Michelle Graham. TAIR10: ARF-GAP domain 5 | chr5:22057262-22061066 REVERSE LENGTH=483
SoyBase E_val: 6.00E-142 ISS
GO:0006499 GO-bp
Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation
SoyBase N/A ISS
GO:0010227 GO-bp
Annotation by Michelle Graham. GO Biological Process: floral organ abscission
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005768 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endosome
SoyBase N/A ISS
GO:0005802 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
KOG0703
KOG
Predicted GTPase-activating protein
JGI ISS
PTHR23180 Panther
CENTAURIN/ARF
JGI ISS
PTHR23180:SF31 Panther
ARF-LIKE
JGI ISS
PF01412 PFAM
Putative GTPase activating protein for Arf
JGI ISS
UniRef100_G7IR44 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein n=4 Tax=Medicago truncatula RepID=G7IR44_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1KE48 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KE48_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g39690
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma06g39690
Paralog Evidence Comments
Glyma12g22360 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g39690 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g254000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g39690
Transcripts of Glyma06g39690
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g39690.2 sequence type=transcript gene model=Glyma06g39690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATCAAACTAATTTCAACGTATTTTAATTACATTCATTATTAAACTCAATGTCAAATTTGAACGTAACCGATCCGCACAAAGACGTTACTATGCGCGAAAAGCCAAAATAAGAGAGCAAAGCTTGAAAATATAGGGAAGTCGCAAATAATAATAGAAGTCAAGGAAGCAACTGCGATATCTCTTTCTTTTTTCTTCATCATCGTGTGTTTTGTTCTGGTGGCATTCTTCTTCTTCTTCTTCTTATCATCACAACCTAGGAAGAGAGAGAGAGAGAGGAGAGAGAAATTGCATTAAAAGACCAATTTGCCCTTCGATCTTCTTCTTCTTCGTCTTCCTCTCTCTCGCACCATGAACGAGAAGGCCAACGTCTCCAAAGAGCTCAACGCTAAACACAAAAAGATACTGGAGGGACTTCTTAAACTACCAGAGAACAAGGAATGTGCTGACTGCAAAGCTAAAGGTCCAAGATGGGCTAGTGTCAATCTTGGCATCTTTATATGCATGCAGTGTTCTGGAATACATAGAAGTCTTGGGGTACACATATCGAAGGTTCGCTCTGCAACTTTGGACACCTGGCTCCCAGAGCAGGTTGCATTCATTCAATCGATGGGAAATGAGAAGGCAAATAGTTACTGGGAAGCAGAATTACCCCAACATTATGATAGAGTTGGAATTGAAAATTTCATTCGTGCAAAGTACGAAGAGAAGAGATGGGCTGCAAGGAATGAGAAACCAAAATCACCTTCTAGTTTCCGAGAAGAGAAAAGTCCTTCACATTGGCAAAAGCCTGAGGAAACGAAGAAAATCCAACCATCAAATGCAATTCCTGCTACAAGAATTAGTGTTCCTGCTCCTCCCAAAGGGCCTGAGCTGGTAACTCCTATGGCAAAACCTCAACATGTTGAGAAAGTGGAACCTGTTGCACCACCACCACAAGCTGAAACTTCAAAACAGACCACTGAAACAACACAAAATTCCCCTCCAAAAGTTGACTATGCTACGGACCTTTTTGACATGTTGTCTATGGATGATCCAAATGAAAAGGGCTCAGGGGCAGCTAATGATAATAACTGGGCAGGTTTTCAGTCTGCTGCAGAGGCATCGGAAGCTGAGAAGACTGATGCCCCAAAAGCAATTGAGAGTACACCCCAGTCGACACGCCAGTCCACTTCTGGAATTGAGGATTTATTTAAAGACTCACCTTCAGTTACACCAAGTTTAACTCCAGAAAAACCACAAAAAGATCTAAAAAATGATATCATGAGCCTCTTTGAGAAGTCCAATGTGGTATCTCCATTTGCAATGCATCAACAGCAGCTGGCCATGCTGGCACAGCAACAGTCTCTTCTAATGGCTGCCGCTAAATCTGCTGGTGGGGATCCCAAGTACCTGGCCAGCTTACAACAACAACAGTCTCTTCTAATGGCTGCTGCTGCTGCTAAATCTGGTGGCACGGATTCCAAGTACCTGGCCAGCATACAAGAACCTGGGTCCAACATTCCTCTCCAAAGTTGGCTGGGTGCTGGCTACCCAATGCCTGGTGCAATGCCCATGGGTAGTCAGGAAGAGTTACAGAAACTCATGCAGACCGTGAACATGAATGCAGCCCATTCAGCTGGGAGTTCAGTTCAATATCCACCATCTAGGTACACTGATTTATTAATTAAAAGTCTGTTGAATTTCAGTTTGGGTAACTTGTTAGGGATTTTGCTTGAATTATTATCTTCATATGATTCTGAATTATCTTGGGTTGATATTGGTGCCAATCAGAAGGATTCACGGTTCCCTAAATCAAAATTAATTAGTTATGTGTGTAGTGTAGGTTGTGCTGCCAAAAGGCTATTTAGGGGGTTCTGTTTACACTGTGTCAACTATCTTATCCTGAACACATGCCAATGAGACATTTTTTGTTTCAAACATTTCTCACAAATGTACCAGTATTATGATATGGCTTTATTAGCTGAAGATTATGTTTCAAATATGCTGTTAATCCTTGCAACAAATCTCATTCATTTAAGCCATCTATATCTCATTATTTGTCCAGGATCTATACATTGCTTCTATTCATTTAAGTCATCGTAGGAAACATAACTCC
Coding sequences of Glyma06g39690
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g39690.1 sequence type=CDS gene model=Glyma06g39690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAACGAGAAGGCCAACGTCTCCAAAGAGCTCAACGCTAAACACAAAAAGATACTGGAGGGACTTCTTAAACTACCAGAGAACAAGGAATGTGCTGACTGCAAAGCTAAAGGTCCAAGATGGGCTAGTGTCAATCTTGGCATCTTTATATGCATGCAGTGTTCTGGAATACATAGAAGTCTTGGGGTACACATATCGAAGGTTCGCTCTGCAACTTTGGACACCTGGCTCCCAGAGCAGGTTGCATTCATTCAATCGATGGGAAATGAGAAGGCAAATAGTTACTGGGAAGCAGAATTACCCCAACATTATGATAGAGTTGGAATTGAAAATTTCATTCGTGCAAAGTACGAAGAGAAGAGATGGGCTGCAAGGAATGAGAAACCAAAATCACCTTCTAGTTTCCGAGAAGAGAAAAGTCCTTCACATTGGCAAAAGCCTGAGGAAACGAAGAAAATCCAACCATCAAATGCAATTCCTGCTACAAGAATTAGTGTTCCTGCTCCTCCCAAAGGGCCTGAGCTGGTAACTCCTATGGCAAAACCTCAACATGTTGAGAAAGTGGAACCTGTTGCACCACCACCACAAGCTGAAACTTCAAAACAGACCACTGAAACAACACAAAATTCCCCTCCAAAAGTTGACTATGCTACGGACCTTTTTGACATGTTGTCTATGGATGATCCAAATGAAAAGGGCTCAGGGGCAGCTAATGATAATAACTGGGCAGGTTTTCAGTCTGCTGCAGAGGCATCGGAAGCTGAGAAGACTGATGCCCCAAAAGCAATTGAGAGTACACCCCAGTCGACACGCCAGTCCACTTCTGGAATTGAGGATTTATTTAAAGACTCACCTTCAGTTACACCAAGTTTAACTCCAGAAAAACCACAAAAAGATCTAAAAAATGATATCATGAGCCTCTTTGAGAAGTCCAATGTGGTATCTCCATTTGCAATGCATCAACAGCAGCTGGCCATGCTGGCACAGCAACAGTCTCTTCTAATGGCTGCCGCTAAATCTGCTGGTGGGGATCCCAAGTACCTGGCCAGCTTACAACAACAACAGTCTCTTCTAATGGCTGCTGCTGCTGCTAAATCTGGTGGCACGGATTCCAAGTACCTGGCCAGCATACAAGAACCTGGGTCCAACATTCCTCTCCAAAGTTGGCTGGGTGCTGGCTACCCAATGCCTGGTGCAATGCCCATGGGTAGTCAGGAAGAGTTACAGAAACTCATGCAGACCGTGAACATGAATGCAGCCCATTCAGCTGGGAGTTCAGTTCAATATCCACCATCTAGCTACTATGCTATGGGACAAGTTGCTCCCTCTAATGGTTCCACGCCAACGGAAGCGAGCAAACCTCAATCAGCCTCTCCAGCATCATCGAACACTTCAAAGACAGGGAACGACTATGATTTTTCCTCCTTAACACAAGGAATGTTTGCAAAACACTGA
>Glyma06g39690.2 sequence type=CDS gene model=Glyma06g39690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAACGAGAAGGCCAACGTCTCCAAAGAGCTCAACGCTAAACACAAAAAGATACTGGAGGGACTTCTTAAACTACCAGAGAACAAGGAATGTGCTGACTGCAAAGCTAAAGGTCCAAGATGGGCTAGTGTCAATCTTGGCATCTTTATATGCATGCAGTGTTCTGGAATACATAGAAGTCTTGGGGTACACATATCGAAGGTTCGCTCTGCAACTTTGGACACCTGGCTCCCAGAGCAGGTTGCATTCATTCAATCGATGGGAAATGAGAAGGCAAATAGTTACTGGGAAGCAGAATTACCCCAACATTATGATAGAGTTGGAATTGAAAATTTCATTCGTGCAAAGTACGAAGAGAAGAGATGGGCTGCAAGGAATGAGAAACCAAAATCACCTTCTAGTTTCCGAGAAGAGAAAAGTCCTTCACATTGGCAAAAGCCTGAGGAAACGAAGAAAATCCAACCATCAAATGCAATTCCTGCTACAAGAATTAGTGTTCCTGCTCCTCCCAAAGGGCCTGAGCTGGTAACTCCTATGGCAAAACCTCAACATGTTGAGAAAGTGGAACCTGTTGCACCACCACCACAAGCTGAAACTTCAAAACAGACCACTGAAACAACACAAAATTCCCCTCCAAAAGTTGACTATGCTACGGACCTTTTTGACATGTTGTCTATGGATGATCCAAATGAAAAGGGCTCAGGGGCAGCTAATGATAATAACTGGGCAGGTTTTCAGTCTGCTGCAGAGGCATCGGAAGCTGAGAAGACTGATGCCCCAAAAGCAATTGAGAGTACACCCCAGTCGACACGCCAGTCCACTTCTGGAATTGAGGATTTATTTAAAGACTCACCTTCAGTTACACCAAGTTTAACTCCAGAAAAACCACAAAAAGATCTAAAAAATGATATCATGAGCCTCTTTGAGAAGTCCAATGTGGTATCTCCATTTGCAATGCATCAACAGCAGCTGGCCATGCTGGCACAGCAACAGTCTCTTCTAATGGCTGCCGCTAAATCTGCTGGTGGGGATCCCAAGTACCTGGCCAGCTTACAACAACAACAGTCTCTTCTAATGGCTGCTGCTGCTGCTAAATCTGGTGGCACGGATTCCAAGTACCTGGCCAGCATACAAGAACCTGGGTCCAACATTCCTCTCCAAAGTTGGCTGGGTGCTGGCTACCCAATGCCTGGTGCAATGCCCATGGGTAGTCAGGAAGAGTTACAGAAACTCATGCAGACCGTGAACATGAATGCAGCCCATTCAGCTGGGAGTTCAGTTCAATATCCACCATCTAGGTACACTGATTTATTAATTAAAAGTCTGTTGAATTTCAGTTTGGGTAACTTGTTAGGGATTTTGCTTGAATTATTATCTTCATATGATTCTGAATTATCTTGGGTTGATATTGGTGCCAATCAGAAGGATTCACGGTTCCCTAAATCAAAATTAATTAGTTATGTGTGTAGTGTAGGTTGTGCTGCCAAAAGGCTATTTAGGGGGTTCTGTTTACACTGTGTCAACTATCTTATCCTGAACACATGCCAATGA
Predicted protein sequences of Glyma06g39690
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g39690.1 sequence type=predicted peptide gene model=Glyma06g39690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNEKANVSKELNAKHKKILEGLLKLPENKECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPQHYDRVGIENFIRAKYEEKRWAARNEKPKSPSSFREEKSPSHWQKPEETKKIQPSNAIPATRISVPAPPKGPELVTPMAKPQHVEKVEPVAPPPQAETSKQTTETTQNSPPKVDYATDLFDMLSMDDPNEKGSGAANDNNWAGFQSAAEASEAEKTDAPKAIESTPQSTRQSTSGIEDLFKDSPSVTPSLTPEKPQKDLKNDIMSLFEKSNVVSPFAMHQQQLAMLAQQQSLLMAAAKSAGGDPKYLASLQQQQSLLMAAAAAKSGGTDSKYLASIQEPGSNIPLQSWLGAGYPMPGAMPMGSQEELQKLMQTVNMNAAHSAGSSVQYPPSSYYAMGQVAPSNGSTPTEASKPQSASPASSNTSKTGNDYDFSSLTQGMFAKH*
>Glyma06g39690.2 sequence type=predicted peptide gene model=Glyma06g39690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNEKANVSKELNAKHKKILEGLLKLPENKECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPQHYDRVGIENFIRAKYEEKRWAARNEKPKSPSSFREEKSPSHWQKPEETKKIQPSNAIPATRISVPAPPKGPELVTPMAKPQHVEKVEPVAPPPQAETSKQTTETTQNSPPKVDYATDLFDMLSMDDPNEKGSGAANDNNWAGFQSAAEASEAEKTDAPKAIESTPQSTRQSTSGIEDLFKDSPSVTPSLTPEKPQKDLKNDIMSLFEKSNVVSPFAMHQQQLAMLAQQQSLLMAAAKSAGGDPKYLASLQQQQSLLMAAAAAKSGGTDSKYLASIQEPGSNIPLQSWLGAGYPMPGAMPMGSQEELQKLMQTVNMNAAHSAGSSVQYPPSRYTDLLIKSLLNFSLGNLLGILLELLSSYDSELSWVDIGANQKDSRFPKSKLISYVCSVGCAAKRLFRGFCLHCVNYLILNTCQ*