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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G21570 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF300) | chr4:11471126-11472269 REVERSE LENGTH=294 | SoyBase | E_val: 1.00E-114 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| PTHR23423 | Panther | ORGANIC SOLUTE TRANSPORTER-RELATED | JGI | ISS | |
| PF03619 | PFAM | Domain of unknown function | JGI | ISS | |
| UniRef100_D6R096 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DUF300 family protein n=1 Tax=Nicotiana tabacum RepID=D6R096_TOBAC | SoyBase | E_val: 9.00E-125 | ISS |
| UniRef100_I1KE43 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KE43_SOYBN | SoyBase | E_val: 2.00E-158 | ISS |
|
Glyma06g39620 not represented in the dataset |
Glyma06g39620 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g22395 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g253700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g39620.2 sequence type=transcript gene model=Glyma06g39620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATATATTTAAAAATCTAAAATAAATATCTATGCCTTGTATTAAACACACTAGTATTTGTTCTATTCGTATATTCCAGAAAATTGATCGGGACTTTGACTTGAATGCATGACGGCTTCTTTGTGTTCTCCATCCGCAATCTAATCTAATGAATCCATCCACAAGAATTTATTTGTAGTGTTCATTACACTCAACAAGAAATTACAGCAATCACCATAGAAGAAGGCAAATCAAAGTTTTGAACCTTGGTTCAATATCTAGAGTCCCTCCAAGCTCAACAAATCAGAGATAATCAAAATGCATCCTGCGCAGATCGTTTTGTATGGATCAACTTTATGTGTCATGATAACAGTGCACTTCTCCATGAAACTACTAGCAGAACATGTTTTGAACTGGAAGAAACCAAAGGAGCAAAACGCCATAGTAATTATAATCCTTATGGCCCCATTGTACGCTGTGGACTCCTATGTTGGTTTGATAAATTTCTTTGGAAGTGAAGCATTTTTCACATTCTTGGACTCAATTAAAGAGTGCTATGAGGCTCTGGTGATTGCTAAGTTTTTGGGTTTGATGTACAGTTTTTTGAACATCTCCTTAAGTAAGAACATAGTGCCGGATGAGATCAAGGGAAGAGAAATTCACCATTCATTTCCAATGACTCTTTTTCAGCCTCACACTACTCGTCTGGACCATAAAACACTGAAGCTTCTAAAAAACTGGACTTGGCAATTTGTCGTGATACGTCCAGTGTGCTCAATCTTGATGATAACTCTACAGTATCTTGAAGTTTATCCCACTTGGGTCAGCTGGACAAACACAGTCATTCTAAACATTTCAGTGTCACTGGCACTGTATTCTCTTGTTGTTTTCTACCATGTGTTTTCTAAAGAGCTGGAACCACATAAGCCTCTTGCCAAGTTTTTATGCATAAAAGGGATTGTCTTTTTCTGCTTCTGGCAGTATTATGGAGGAGTTGCATCCCTCCTGCAAAATCCATGCCGCTTTGGAACTTCATACTTAACAGACTGCCAACAGATGATATCCTGGCAAAGGCTGGCTACCACATTGTTTCCAGATGCAAAATGTGTCATAAAAATTTGGAGACTGCTGATCATTTATTTCTGTGCTGTCCTTTTGCGATTCAGCTATGGACCTGGCTGGAGTCTATGCGCAGCTGCAGCATCAACCGATCTAATGCCTTGTCTCTTTTGAATATTGTGTCGCCTTTCACTTCAGCCCAATTAAATGATGTCAGAATTGCAGCTGTTGGATATGTCATTTGGATCATTTGGACAGCTAGAAACAATAGTCTGTTTTCCAACCAAGCGACTTCTTTCCAAAGCCCTTGCTTGTTAGTTGTAGCTAATGTCAAGCTTTCAGGGAATTGTGCTTGATCTCCTGGCAGCACTGGGAATAATCAGATCCCGTTATTCGTGGCTAACCGTGGAACGCATTGAGGAAGGCTACCAAAACCTTTTGGTTTGTCTTGAAATGGTTTTCTTCTCAATATATCAGCAATACGCATACAGTGCTGCTCCATACAAGGTCAATAGTTCACCTTCAGATAAAAAATCAAAGTGATTCCAGGACATGATGGATTACTTGGCTGTTAAGAACATCAATGTATTTACTTTCAGAATGAGTGTTGCTTCTTTCTCACCTCTCCTCCATGAGACAATTAGTAAACAAATGTTCGAGAAATGGCAGAGTCTTTTGAATAAGATCCATATACATTGATGCCTCTTCTAATGATCTAGAAAGTTTTATCCTACATTTCTGCTTGGATTTTCTGTTTTCATTGTATTTGTCTTATCTCATCGCAGACCTAATTACTTTTGTTGGTCTTACACCAACAGAAACCCTTGATTATAACCCTTTTTCGTTTGGTTAATAGCCTCTTTCAACTTGCAATTGCAGTACTCATTGATTGGAAATTCTACCGTTACAATTGTGGTAAAATACATGTTTATATACAATAAATTATGCAGTTAAAATTTTAATTATTA >Glyma06g39620.3 sequence type=transcript gene model=Glyma06g39620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATATATTTAAAAATCTAAAATAAATATCTATGCCTTGTATTAAACACACTAGTATTTGTTCTATTCGTATATTCCAGAAAATTGATCGGGACTTTGACTTGAATGCATGACGGCTTCTTTGTGTTCTCCATCCGCAATCTAATCTAATGAATCCATCCACAAGAATTTATTTGTAGTGTTCATTACACTCAACAAGAAATTACAGCAATCACCATAGAAGAAGGCAAATCAAAGTTTTGAACCTTGGTTCAATATCTAGAGTCCCTCCAAGCTCAACAAATCAGAGATAATCAAAATGCATCCTGCGCAGATCGTTTTGTATGGATCAACTTTATGTGTCATGATAACAGTGCACTTCTCCATGAAACTACTAGCAGAACATGTTTTGAACTGGAAGAAACCAAAGGAGCAAAACGCCATAGTAATTATAATCCTTATGGCCCCATTGTACGCTGTGGACTCCTATGTTGGTTTGATAAATTTCTTTGGAAGTGAAGCATTTTTCACATTCTTGGACTCAATTAAAGAGTGCTATGAGGCTCTGGTGATTGCTAAGTTTTTGGGTTTGATGTACAGTTTTTTGAACATCTCCTTAAGTAAGAACATAGTGCCGGATGAGATCAAGGGAAGAGAAATTCACCATTCATTTCCAATGACTCTTTTTCAGCCTCACACTACTCGTCTGGACCATAAAACACTGAAGCTTCTAAAAAACTGGACTTGGCAATTTGTCGTGATACGTCCAGTGTGCTCAATCTTGATGATAACTCTACAGTATCTTGAAGTTTATCCCACTTGGGTCAGCTGGACAAACACAGTCATTCTAAACATTTCAGTGTCACTGGCACTGTATTCTCTTGTTGTTTTCTACCATGTGTTTTCTAAAGAGCTGGAACCACATAAGCCTCTTGCCAAGTTTTTATGCATAAAAGGGATTGTCTTTTTCTGCTTCTGGCAGGGAATTGTGCTTGATCTCCTGGCAGCACTGGGAATAATCAGATCCCGTTATTCGTGGCTAACCGTGGAACGCATTGAGGAAGGCTACCAAAACCTTTTGGTTTGTCTTGAAATGGTTTTCTTCTCAATATATCAGCAATACGCATACAGTGCTGCTCCATACAAGGTCAATAGTTCACCTTCAGATAAAAAATCAAAGTGATTCCAGGACATGATGGATTACTTGGCTGTTAAGAACATCAATGTATTTACTTTCAGAATGAGTGTTGCTTCTTTCTCACCTCTCCTCCATGAGACAATTAGTAAACAAATGTTCGAGAAATGGCAGAGTCTTTTGAATAAGATCCATATACATTGATGCCTCTTCTAATGATCTAGAAAGTTTTATCCTACATTTCTGCTTGGATTTTCTGTTTTCATTGTATTTGTCTTATCTCATCGCAGACCTAATTACTTTTGTTGGTCTTACACCAACAGAAACCCTTGATTATAACCCTTTTTCGTTTGGTTAATAGCCTCTTTCAACTTGCAATTGCAGTACTCATTGATTGGAAATTCTACCGTTACAATTGTGGTAAAATACATGTTTATATACAATAAATTATGCAGTTAAAATTTTAATTATTA
>Glyma06g39620.1 sequence type=CDS gene model=Glyma06g39620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCATCCTGCGCAGATCGTTTTGTATGGATCAACTTTATGTGTCATGATAACAGTGCACTTCTCCATGAAACTACTAGCAGAACATGTTTTGAACTGGAAGAAACCAAAGGAGCAAAACGCCATAGTAATTATAATCCTTATGGCCCCATTGTACGCTGTGGACTCCTATGTTGGTTTGATAAATTTCTTTGGAAGTGAAGCATTTTTCACATTCTTGGACTCAATTAAAGAGTGCTATGAGGCTCTGGTGATTGCTAAGTTTTTGGGTTTGATGTACAGTTTTTTGAACATCTCCTTAAGTAAGAACATAGTGCCGGATGAGATCAAGGGAAGAGAAATTCACCATTCATTTCCAATGACTCTTTTTCAGCCTCACACTACTCGTCTGGACCATAAAACACTGAAGCTTCTAAAAAACTGGACTTGGCAATTTGTCGTGATACGTCCAGTGTGCTCAATCTTGATGATAACTCTACAGTATCTTGAAGTTTATCCCACTTGGGTCAGCTGGACAAACACAGTCATTCTAAACATTTCAGTGTCACTGGCACTGTATTCTCTTGTTGTTTTCTACCATGTGTTTTCTAAAGAGCTGGAACCACATAAGCCTCTTGCCAAGTTTTTATGCATAAAAGGGATTGTCTTTTTCTGCTTCTGGCAGGTATTTTCCTATGCTTTACCTTGA >Glyma06g39620.2 sequence type=CDS gene model=Glyma06g39620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCATCCTGCGCAGATCGTTTTGTATGGATCAACTTTATGTGTCATGATAACAGTGCACTTCTCCATGAAACTACTAGCAGAACATGTTTTGAACTGGAAGAAACCAAAGGAGCAAAACGCCATAGTAATTATAATCCTTATGGCCCCATTGTACGCTGTGGACTCCTATGTTGGTTTGATAAATTTCTTTGGAAGTGAAGCATTTTTCACATTCTTGGACTCAATTAAAGAGTGCTATGAGGCTCTGGTGATTGCTAAGTTTTTGGGTTTGATGTACAGTTTTTTGAACATCTCCTTAAGTAAGAACATAGTGCCGGATGAGATCAAGGGAAGAGAAATTCACCATTCATTTCCAATGACTCTTTTTCAGCCTCACACTACTCGTCTGGACCATAAAACACTGAAGCTTCTAAAAAACTGGACTTGGCAATTTGTCGTGATACGTCCAGTGTGCTCAATCTTGATGATAACTCTACAGTATCTTGAAGTTTATCCCACTTGGGTCAGCTGGACAAACACAGTCATTCTAAACATTTCAGTGTCACTGGCACTGTATTCTCTTGTTGTTTTCTACCATGTGTTTTCTAAAGAGCTGGAACCACATAAGCCTCTTGCCAAGTTTTTATGCATAAAAGGGATTGTCTTTTTCTGCTTCTGGCAGTATTATGGAGGAGTTGCATCCCTCCTGCAAAATCCATGCCGCTTTGGAACTTCATACTTAACAGACTGCCAACAGATGATATCCTGGCAAAGGCTGGCTACCACATTGTTTCCAGATGCAAAATGTGTCATAAAAATTTGGAGACTGCTGATCATTTATTTCTGTGCTGTCCTTTTGCGATTCAGCTATGGACCTGGCTGGAGTCTATGCGCAGCTGCAGCATCAACCGATCTAATGCCTTGTCTCTTTTGA >Glyma06g39620.3 sequence type=CDS gene model=Glyma06g39620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCATCCTGCGCAGATCGTTTTGTATGGATCAACTTTATGTGTCATGATAACAGTGCACTTCTCCATGAAACTACTAGCAGAACATGTTTTGAACTGGAAGAAACCAAAGGAGCAAAACGCCATAGTAATTATAATCCTTATGGCCCCATTGTACGCTGTGGACTCCTATGTTGGTTTGATAAATTTCTTTGGAAGTGAAGCATTTTTCACATTCTTGGACTCAATTAAAGAGTGCTATGAGGCTCTGGTGATTGCTAAGTTTTTGGGTTTGATGTACAGTTTTTTGAACATCTCCTTAAGTAAGAACATAGTGCCGGATGAGATCAAGGGAAGAGAAATTCACCATTCATTTCCAATGACTCTTTTTCAGCCTCACACTACTCGTCTGGACCATAAAACACTGAAGCTTCTAAAAAACTGGACTTGGCAATTTGTCGTGATACGTCCAGTGTGCTCAATCTTGATGATAACTCTACAGTATCTTGAAGTTTATCCCACTTGGGTCAGCTGGACAAACACAGTCATTCTAAACATTTCAGTGTCACTGGCACTGTATTCTCTTGTTGTTTTCTACCATGTGTTTTCTAAAGAGCTGGAACCACATAAGCCTCTTGCCAAGTTTTTATGCATAAAAGGGATTGTCTTTTTCTGCTTCTGGCAGGGAATTGTGCTTGATCTCCTGGCAGCACTGGGAATAATCAGATCCCGTTATTCGTGGCTAACCGTGGAACGCATTGAGGAAGGCTACCAAAACCTTTTGGTTTGTCTTGAAATGGTTTTCTTCTCAATATATCAGCAATACGCATACAGTGCTGCTCCATACAAGGTCAATAGTTCACCTTCAGATAAAAAATCAAAGTGA
>Glyma06g39620.1 sequence type=predicted peptide gene model=Glyma06g39620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHPAQIVLYGSTLCVMITVHFSMKLLAEHVLNWKKPKEQNAIVIIILMAPLYAVDSYVGLINFFGSEAFFTFLDSIKECYEALVIAKFLGLMYSFLNISLSKNIVPDEIKGREIHHSFPMTLFQPHTTRLDHKTLKLLKNWTWQFVVIRPVCSILMITLQYLEVYPTWVSWTNTVILNISVSLALYSLVVFYHVFSKELEPHKPLAKFLCIKGIVFFCFWQVFSYALP* >Glyma06g39620.2 sequence type=predicted peptide gene model=Glyma06g39620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHPAQIVLYGSTLCVMITVHFSMKLLAEHVLNWKKPKEQNAIVIIILMAPLYAVDSYVGLINFFGSEAFFTFLDSIKECYEALVIAKFLGLMYSFLNISLSKNIVPDEIKGREIHHSFPMTLFQPHTTRLDHKTLKLLKNWTWQFVVIRPVCSILMITLQYLEVYPTWVSWTNTVILNISVSLALYSLVVFYHVFSKELEPHKPLAKFLCIKGIVFFCFWQYYGGVASLLQNPCRFGTSYLTDCQQMISWQRLATTLFPDAKCVIKIWRLLIIYFCAVLLRFSYGPGWSLCAAAASTDLMPCLF* >Glyma06g39620.3 sequence type=predicted peptide gene model=Glyma06g39620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHPAQIVLYGSTLCVMITVHFSMKLLAEHVLNWKKPKEQNAIVIIILMAPLYAVDSYVGLINFFGSEAFFTFLDSIKECYEALVIAKFLGLMYSFLNISLSKNIVPDEIKGREIHHSFPMTLFQPHTTRLDHKTLKLLKNWTWQFVVIRPVCSILMITLQYLEVYPTWVSWTNTVILNISVSLALYSLVVFYHVFSKELEPHKPLAKFLCIKGIVFFCFWQGIVLDLLAALGIIRSRYSWLTVERIEEGYQNLLVCLEMVFFSIYQQYAYSAAPYKVNSSPSDKKSK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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