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Report for Sequence Feature Glyma06g39540

Feature Type:gene_model
Chromosome:Gm06
Start:42326356
stop:42327172
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g39540
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G53903AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF581) | chr1:20132363-20132842 FORWARD LENGTH=126 SoyBaseE_val: 4.00E-20ISS
PF04570PFAM Protein of unknown function (DUF581) JGI ISS
UniRef100_UPI000233A72FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A72F related cluster n=1 Tax=unknown RepID=UPI000233A72F SoyBaseE_val: 1.00E-93ISS

Expression Patterns of Glyma06g39540
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g39540 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g253400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g39540
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g39540
>Glyma06g39540.2   sequence type=CDS   gene model=Glyma06g39540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTCCAAAGTTCATCATTAGCCCCTTCAGGGTGGAATCCCAAGAAGGGATGCATGTGAACAAGAGAAGAAAGCATGTGAGATCATTTGAGAGTACCAACATGGATGTTGGTTTGAGACTTCTCCCTCAAATTACAAGCTCAAATAGCACATCAAATGTCCTCTTGAAATCTGCAGTGAGAAAGGCAAACCAACAATCCATCCCTCAAGACTTATGCTTCCTTAAAACTTGCAATCTATGCAATAAGCAACAAAGTCCAGACAAAGATATTTACATGTACATCAGAGATCAAAGTTTCTGCAGTGTAGTGACCAAGCAAATGGTAGCTGCTTATAGGCAATGTTCTAGTGGGGCACGTAGTGAGACTCGCCTTATACTTGAGGACCTACGAATGCACAGACTTAAATCTAGAGTCTAA
Predicted protein sequences of Glyma06g39540
>Glyma06g39540.2   sequence type=predicted peptide   gene model=Glyma06g39540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLPKFIISPFRVESQEGMHVNKRRKHVRSFESTNMDVGLRLLPQITSSNSTSNVLLKSAVRKANQQSIPQDLCFLKTCNLCNKQQSPDKDIYMYIRDQSFCSVVTKQMVAAYRQCSSGARSETRLILEDLRMHRLKSRV*






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