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Report for Sequence Feature Glyma06g39310

Feature Type:gene_model
Chromosome:Gm06
Start:42156335
stop:42156610
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g39310
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G48120AT Annotation by Michelle Graham. TAIR10: unknown protein; Has 22990 Blast hits to 12942 proteins in 666 species: Archae - 8; Bacteria - 739; Metazoa - 13803; Fungi - 2465; Plants - 1363; Viruses - 116; Other Eukaryotes - 4496 (source: NCBI BLink). | chr3:17772137-17774550 FORWARD LENGTH=328 SoyBaseE_val: 9.00E-21ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_B6TT29UniRef Annotation by Michelle Graham. Most informative UniRef hit: Arginine/serine-rich coiled coil protein 1 n=1 Tax=Zea mays RepID=B6TT29_MAIZE SoyBaseE_val: 7.00E-13ISS
UniRef100_I1JZW2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JZW2_SOYBN SoyBaseE_val: 2.00E-34ISS

Expression Patterns of Glyma06g39310
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g39310 not represented in the dataset
Glyma06g39310 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g39310 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma06g39310
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g39310
>Glyma06g39310.1   sequence type=CDS   gene model=Glyma06g39310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAGAAAAAGCAGCGGCGTACTACGACGAGCTGACCCGTAAGGGCGAGAGAGCTGCGAGGTTCAAGCAAGGTCTCGGCTTTTCCTCTTCAGCACCAAACGACGATGTTGGAAAACCCTCCTCCTCCTTCCTCTCCAAATTTGTCAAAGCCTCGTTCGAGTCGAAGAAGGAAGCGCAGCTCCAATCCATCCATGACAGGCTCAAGGAAAAGCCTTCTTTCAAGTCTAGGGTTTCGAGCAGGGATAGGGACAGCAATAGAAGTAGAAGATGA
Predicted protein sequences of Glyma06g39310
>Glyma06g39310.1   sequence type=predicted peptide   gene model=Glyma06g39310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEEKAAAYYDELTRKGERAARFKQGLGFSSSAPNDDVGKPSSSFLSKFVKASFESKKEAQLQSIHDRLKEKPSFKSRVSSRDRDSNRSRR*






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