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Report for Sequence Feature Glyma06g38980

Feature Type:gene_model
Chromosome:Gm06
Start:41924496
stop:41926550
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g38980
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G03610AT Annotation by Michelle Graham. TAIR10: GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:915650-918326 FORWARD LENGTH=359 SoyBaseE_val: 3.00E-46ISS
GO:0006629GO-bp Annotation by Michelle Graham. GO Biological Process: lipid metabolic process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0016788GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds SoyBaseN/AISS
PTHR22835Panther ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN JGI ISS
PTHR22835:SF39Panther LATERAL SIGNALING TARGET PROTEIN 2 JGI ISS
PF00657PFAM GDSL-like Lipase/Acylhydrolase JGI ISS
UniRef100_G7I358UniRef Annotation by Michelle Graham. Most informative UniRef hit: GDSL esterase/lipase n=1 Tax=Medicago truncatula RepID=G7I358_MEDTR SoyBaseE_val: 8.00E-75ISS
UniRef100_I1KE22UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KE22_SOYBN SoyBaseE_val: 4.00E-118ISS

Expression Patterns of Glyma06g38980
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g38980 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma06g38980
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g38980
>Glyma06g38980.1   sequence type=CDS   gene model=Glyma06g38980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAGTGTAGAAAACAGAAACGATTTACCAGGCTTCATGGAATCCCTTGTGAAGCAAATGTCTGTAAATCTTAAACGCATTCACAGCTTAGGGATAAAAAAGGTAGCAGTTGGGTTATTACAGCCAATTGGGTGTTTGCCTGTGTTAAATGTGATATCTTTCCGTACGAACTGCATTGGCCTTTTGAACGTGATCTCCAAAGATCACAACAAAATGTTGCTCAAAGCTGTGCAAGAACTCAACAAGGAAGCAGCAGACAAATCAGTTTTCATAACACTGGACCTCTACAACTCCTTCCTCTCTGCAATTGAAACTATGCAGAAAAAGCGTGCAGAAAAGTCTACACTGATGAATCCGTTGCAACCATGCTGTGAGGGAAACAATTTGGAAGATTCATGTGGAAGTGTGGATGACGAAGGATCAAAGAAATACAGTTTATGTGAGAACCCAAAACTTTCTTTCTTTTGGGACACACTTCACCCTTCTCAAAATGGTTGGTTTGCAGTCTACACCCAATAG
Predicted protein sequences of Glyma06g38980
>Glyma06g38980.1   sequence type=predicted peptide   gene model=Glyma06g38980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSVENRNDLPGFMESLVKQMSVNLKRIHSLGIKKVAVGLLQPIGCLPVLNVISFRTNCIGLLNVISKDHNKMLLKAVQELNKEAADKSVFITLDLYNSFLSAIETMQKKRAEKSTLMNPLQPCCEGNNLEDSCGSVDDEGSKKYSLCENPKLSFFWDTLHPSQNGWFAVYTQ*






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