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Report for Sequence Feature Glyma06g38831

Feature Type:gene_model
Chromosome:Gm06
Start:41806945
stop:41807555
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g38831
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G80410AT Annotation by Michelle Graham. TAIR10: tetratricopeptide repeat (TPR)-containing protein | chr1:30227963-30234832 REVERSE LENGTH=897 SoyBaseE_val: 6.00E-28ISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
PTHR22767Panther N-TERMINAL ACETLYTRANSFERASE-RELATED JGI ISS
PTHR22767:SF2Panther N-TERMINAL ACETLYTRANSFERASE-RELATED JGI ISS
PF07719PFAM Tetratricopeptide repeat JGI ISS
UniRef100_G7IMD3UniRef Annotation by Michelle Graham. Best UniRef hit: NMDA receptor-regulated protein n=1 Tax=Medicago truncatula RepID=G7IMD3_MEDTR SoyBaseE_val: 8.00E-27ISS
UniRef100_G7IMD3UniRef Annotation by Michelle Graham. Most informative UniRef hit: NMDA receptor-regulated protein n=1 Tax=Medicago truncatula RepID=G7IMD3_MEDTR SoyBaseE_val: 8.00E-27ISS

Expression Patterns of Glyma06g38831
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g38831 not represented in the dataset
Glyma06g38831 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g38831 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g250800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g38831
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g38831
>Glyma06g38831.1   sequence type=CDS   gene model=Glyma06g38831   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGGTTTGACATTAAATTGCATGGACCGTAAGTTTGAAGCATATGAACTAGTTTATCAATCTTACAATAGTTGTCTGTTAGATGATCCAGCTTTGATTTTTGTTCTGGTACAGAATGACCTTAAAAGTCATGTTTGCTGGCATGTTTATGGTCTCCTTCATCAGTCAGACAGAGAATACAGGGAGGCGATCAAGTGCTATCGAAATGCACTGAGAATTGATCCCGACAAAGGATGA
Predicted protein sequences of Glyma06g38831
>Glyma06g38831.1   sequence type=predicted peptide   gene model=Glyma06g38831   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKGLTLNCMDRKFEAYELVYQSYNSCLLDDPALIFVLVQNDLKSHVCWHVYGLLHQSDREYREAIKCYRNALRIDPDKG*






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