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Report for Sequence Feature Glyma06g38725

Feature Type:gene_model
Chromosome:Gm06
Start:41760765
stop:41762782
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g38725
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G37210AT Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:17512376-17514072 FORWARD LENGTH=377 SoyBaseE_val: 3.00E-25ISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0006342GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing SoyBaseN/AISS
GO:0006346GO-bp Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009855GO-bp Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0010014GO-bp Annotation by Michelle Graham. GO Biological Process: meristem initiation SoyBaseN/AISS
GO:0010073GO-bp Annotation by Michelle Graham. GO Biological Process: meristem maintenance SoyBaseN/AISS
GO:0016246GO-bp Annotation by Michelle Graham. GO Biological Process: RNA interference SoyBaseN/AISS
GO:0016570GO-bp Annotation by Michelle Graham. GO Biological Process: histone modification SoyBaseN/AISS
GO:0031047GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA SoyBaseN/AISS
GO:0031048GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA SoyBaseN/AISS
GO:0048449GO-bp Annotation by Michelle Graham. GO Biological Process: floral organ formation SoyBaseN/AISS
GO:0051567GO-bp Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
PTHR15081Panther NUCLEAR AUTOANTIGENIC SPERM PROTEIN (NASP)-RELATED JGI ISS
PTHR15081:SF1Panther PROTEIN HGV2 JGI ISS
UniRef100_G7K9G9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nuclear autoantigenic sperm protein n=1 Tax=Medicago truncatula RepID=G7K9G9_MEDTR SoyBaseE_val: 8.00E-39ISS
UniRef100_UPI000233A71EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A71E related cluster n=1 Tax=unknown RepID=UPI000233A71E SoyBaseE_val: 4.00E-81ISS

Expression Patterns of Glyma06g38725
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g38725 not represented in the dataset
Glyma06g38725 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g38725 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g250700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g38725
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g38725
>Glyma06g38725.1   sequence type=CDS   gene model=Glyma06g38725   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGGTGTGCATTATGTAAAAGGAAACAAGGCAATTAAGGAAAACGATTTTGGAGAAGCAGCTGATAACTTTAGTCGTGCTCACGAAATCAGAGTGGCACATTATGGTGAACTTGCTCCTGAGTGTGTGCACACATACTACAAATATGGGTGTGCTCTTTTGTACAAGGCTCAGGAGGATGCTGATCCATTGGCTGATGTGCCCAAGAAGGAGGATGGATCTCAACATGGCTCCAACAAAGATGGTTCTAAATTGCCAAGAATATGCCATCTAGATCTTAGCACCATTGAGATATGCCACTGTCTATGGATGCTCAGATGCAACAATAGTTCTAGGAGGGCCCACTGA
Predicted protein sequences of Glyma06g38725
>Glyma06g38725.1   sequence type=predicted peptide   gene model=Glyma06g38725   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGVHYVKGNKAIKENDFGEAADNFSRAHEIRVAHYGELAPECVHTYYKYGCALLYKAQEDADPLADVPKKEDGSQHGSNKDGSKLPRICHLDLSTIEICHCLWMLRCNNSSRRAH*






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