Report for Sequence Feature Glyma06g38540
Feature Type: gene_model
Chromosome: Gm06
Start: 41499709
stop: 41501169
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g38540
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
PF00407 PFAM
Pathogenesis-related protein Bet v I family
JGI ISS
UniRef100_I1KE09 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KE09_SOYBN
SoyBase E_val: 3.00E-106 ISS
UniRef100_Q9ZWP8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Cytokinin-specific binding protein n=1 Tax=Vigna radiata RepID=Q9ZWP8_VIGRA
SoyBase E_val: 8.00E-92 ISS
Expression Patterns of Glyma06g38540
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma06g38540 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g249800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g38540
Coding sequences of Glyma06g38540
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g38540.1 sequence type=CDS gene model=Glyma06g38540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATAAAGGAATTCAACACCCAAACCGAGGTTAGTGTGAGATTGGAAGCCCTCTGGGCAGTTCTGTCCAAGGATTTCGTCACCGTAGCTCCAAAGGTACTCCCCAATATTGTGAAGGATGTGCAAGTGATTGAAGGTGATGGAGGGGTTGGTACAATCCTCATCTTTAATTTTTTGTCTGATGTGTCCCCAAGTTACCAAAGGGAGAAGATCACAGAGTTTGATGAAATTTCACATGAAATTGGGCTGCAAGTGATTGAAGGAGGTTATCTGAGTCAAGGATTGTCATACTACAAGACAACTTTTCAGTTATCTGCAATAGGAGAGGATAAGACTTTGGTCAACGTGAAAATTTCTTATGACCATGAATCCGAGATAGAAGAAAGGGTCAAACCTACGAAGACATCAGAGTCAACTTTATTATATCTTAGGCGTCTAGAAACATATCTGTCCAATGGCGCTTGA
Predicted protein sequences of Glyma06g38540
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g38540.1 sequence type=predicted peptide gene model=Glyma06g38540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MIKEFNTQTEVSVRLEALWAVLSKDFVTVAPKVLPNIVKDVQVIEGDGGVGTILIFNFLSDVSPSYQREKITEFDEISHEIGLQVIEGGYLSQGLSYYKTTFQLSAIGEDKTLVNVKISYDHESEIEERVKPTKTSESTLLYLRRLETYLSNGA*