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Report for Sequence Feature Glyma06g38540

Feature Type:gene_model
Chromosome:Gm06
Start:41499709
stop:41501169
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
PF00407PFAM Pathogenesis-related protein Bet v I family JGI ISS
UniRef100_I1KE09UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KE09_SOYBN SoyBaseE_val: 3.00E-106ISS
UniRef100_Q9ZWP8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cytokinin-specific binding protein n=1 Tax=Vigna radiata RepID=Q9ZWP8_VIGRA SoyBaseE_val: 8.00E-92ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g249800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma06g38540.1   sequence type=CDS   gene model=Glyma06g38540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAAAGGAATTCAACACCCAAACCGAGGTTAGTGTGAGATTGGAAGCCCTCTGGGCAGTTCTGTCCAAGGATTTCGTCACCGTAGCTCCAAAGGTACTCCCCAATATTGTGAAGGATGTGCAAGTGATTGAAGGTGATGGAGGGGTTGGTACAATCCTCATCTTTAATTTTTTGTCTGATGTGTCCCCAAGTTACCAAAGGGAGAAGATCACAGAGTTTGATGAAATTTCACATGAAATTGGGCTGCAAGTGATTGAAGGAGGTTATCTGAGTCAAGGATTGTCATACTACAAGACAACTTTTCAGTTATCTGCAATAGGAGAGGATAAGACTTTGGTCAACGTGAAAATTTCTTATGACCATGAATCCGAGATAGAAGAAAGGGTCAAACCTACGAAGACATCAGAGTCAACTTTATTATATCTTAGGCGTCTAGAAACATATCTGTCCAATGGCGCTTGA

>Glyma06g38540.1   sequence type=predicted peptide   gene model=Glyma06g38540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIKEFNTQTEVSVRLEALWAVLSKDFVTVAPKVLPNIVKDVQVIEGDGGVGTILIFNFLSDVSPSYQREKITEFDEISHEIGLQVIEGGYLSQGLSYYKTTFQLSAIGEDKTLVNVKISYDHESEIEERVKPTKTSESTLLYLRRLETYLSNGA*







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