Glyma06g38490 - SoyBase

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Report for Sequence Feature Glyma06g38490

Feature Type:	gene_model
Chromosome:	Gm06
Start:	41430977
stop:	41439176
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g38490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G54390	AT	Annotation by Michelle Graham. TAIR10: HAL2-like \| chr5:22086133-22087586 FORWARD LENGTH=373	SoyBase	E_val: 0	ISS
GO:0006790	GO-bp	Annotation by Michelle Graham. GO Biological Process: sulfur compound metabolic process	SoyBase	N/A	ISS
GO:0046854	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol phosphorylation	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0008441	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 3'(2'),5'-bisphosphate nucleotidase activity	SoyBase	N/A	ISS
KOG1528	KOG	Salt-sensitive 3'-phosphoadenosine-5'-phosphatase HAL2/SAL1	JGI		ISS
PTHR20854	Panther	INOSITOL MONOPHOSPHATASE	JGI		ISS
PTHR20854:SF3	Panther	DIPHOSPHONUCLEOSIDE PHOSPHOHYDROLASE	JGI		ISS
PF00459	PFAM	Inositol monophosphatase family	JGI		ISS
UniRef100_B9T8E1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Diphosphonucleoside phosphohydrolase, putative n=1 Tax=Ricinus communis RepID=B9T8E1_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KE06	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KE06_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g38490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g38490

Paralog	Evidence	Comments
Glyma12g22680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g38490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g249500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g38490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g38490

Limit To All Plant Sequences

>Glyma06g38490.2   sequence type=transcript   gene model=Glyma06g38490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTTATGTTTTATCATGGACAGAGTGCAATTCAGAGAAACCAAATCCCAGACACCATACAACACAACACAGCACTTTGGTCGTGTTTCGTTTCATCTTTTTCTCCGAGAAAGATCCACCCCACGTTTCAAAATCACTTTTTTTCTCTGCTTTGGGAAATGATGCCATTGTTGTCCCTTGCGAAGCCAAACCCCATCACCACCATCATCATGTAGGAGCGACTCAACAACTCGAGTCTCGCGTTCCTCTTCCTCCCCCTCTGGGCACGTGAGAATTCTCCGATTCTGAAACCGAGGCACGTGACGTTAGCGTGCGTGTGTTTTTGGCTATGGAGGAGGACAAGTACGCGAAGGAATTGGAGGTGGCTGTTAGGGTGGTCCACGTGGCGTGTGCTCTCTGCGGGAGGGTGCAGGAGAGGCTCCTTGCCACCACCAATGATCACGTTCTAGCCAAGGATGATGATTCTCCCGTTACTGTTGCAGACTTTAGTGTTCAAGCAACTATTAGTTGGTTACTATCAGAAATTTTCGGGGTTCAAAATGTGTCAATCATTGCCGAAGAAGACATACAAACCATCTCCAAGGATGAATCAGCAAGCTTACTGGAAGCTGTTGTGAATACTGTGAATGAGTCTTTAGCTTTTGCATCCAAGTACGGTTTTCAAAGTCCGGAGACAACTCTAGGGACATCTGAAGTTCTTGAGGCCATTGCCCGTTGCAACTCAACTGGAGGCTCCAGGGGAAGATATTGGGTGCTTGACCCTGTTGATGGCACATTAGGATTTGTACGCGGGGATCAGTATGCTATTGCTCTAGCTCTGATTGAGGATGGAAAAGTTGTTCTTGGAGTTCTGGGGTGTCCTAATTACCCAGTAAAGACAGAATGGCTTAGTTATCATTACCAGCATCATCAAACAGCGCCAGAATCATCTCTAACAACTCCTGATACTGGGGGAAAAGGATGTGTATTGTATGCAAGAAAAGGAAGTGGTGAGGCATGGCTGCAGTCATTAATTGATGGAGATAACATGCTAGAATGGTCGAATTGTGCTAGACTTATTCGTGTTTCTTCGATTGAAGATCCGGCATTGGCAACTCTTTGTGAACCAGTGGAAAGGGCAAACTCAAACCATTCATTCACAGCTGGGCTTGCTCACAGTGTGGGACTTAGAAAACAGCCCTTGCGTGTGCACAGCATGGTAAAATACGCAGCAATAGCCCGGGGGGACGCGGAGATATTCATGAAATTCGCAAAGTGTGGCTACAAGGAGAAGATATGGGATCATGCTGCCGGCGTTGTTATTGTTGAGGAGGCTGGTGGTGTGGTAACTGATGCCGGGGGGCGCCCTCTGGACTTTTCAAAGGGAATGTACTTGGAAGGTCTTGACAGAGGCATAATTGCATGCTCTGGTGTCACATTGCATGAAAAATTAATTGATGCTGTTTATGCTAGCTGGGACTCCTCAAATTTATGAGCCATTCTTTCTTCTGTCAATGAGGCAAAATTTTGGAAATCTCCACCAAGAGGATGATTGGTACAATTGATGTTGAATATGGTTTGTACAAACTCAAGTCAACCTCTAGCCATCACAACAATACATCCCTTGCTATACTTAATCCCTCCAATTATGTCAATTCTTGTAATACAATACTATTGATATATGACACTGCAGGTTAGGACACTTATCC

Coding sequences of Glyma06g38490

Limit To All Plant Sequences

>Glyma06g38490.1   sequence type=CDS   gene model=Glyma06g38490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGGACAAGTACGCGAAGGAATTGGAGGTGGCTGTTAGGGTGGTCCACGTGGCGTGTGCTCTCTGCGGGAGGGTGCAGGAGAGGCTCCTTGCCACCACCAATGATCACGTTCTAGCCAAGGATGATGATTCTCCCGTTACTGTTGCAGACTTTAGTGTTCAAGCAACTATTAGTTGGTTACTATCAGAAATTTTCGGGGTTCAAAATGTGTCAATCATTGCCGAAGAAGACATACAAACCATCTCCAAGGATGAATCAGCAAGCTTACTGGAAGCTGTTGTGAATACTGTGAATGAGTCTTTAGCTTTTGCATCCAAGTACGGTTTTCAAAGTCCGGAGACAACTCTAGGGACATCTGAAGTTCTTGAGGCCATTGCCCGTTGCAACTCAACTGGAGGCTCCAGGGGAAGATATTGGGTGCTTGACCCTGTTGATGGCACATTAGGATTTGTACGCGGGGATCAGTATGCTATTGCTCTAGCTCTGATTGAGGATGGAAAAGTTGTTCTTGGAGTTCTGGGGTGTCCTAATTACCCAGTAAAGACAGAATGGCTTAGTTATCATTACCAGCATCATCAAACAGCGCCAGAATCATCTCTAACAACTCCTGATACTGGGGGAAAAGGATGTGTATTGTATGCAAGAAAAGGAAGTGGTGAGGCATGGCTGCAGTCATTAATTGATGGAGATAACATGCTAGAATGGTCGAATTGTGCTAGACTTATTCGTGTTTCTTCGATTGAAGATCCGGCATTGGCAACTCTTTGTGAACCAGTGGAAAGGGCAAACTCAAACCATTCATTCACAGCTGGGCTTGCTCACAGTGTGGGACTTAGAAAACAGCCCTTGCGTGTGCACAGCATGGTAAAATACGCAGCAATAGCCCGGGGGGACGCGGAGATATTCATGAAATTCGCAAAGTGTGGCTACAAGGAGAAGATATGGGATCATGCTGCCGGCGTTGTTATTGTTGAGGAGGCTGGTGGTGTGGTAACTGATGCCGGGGGGCGCCCTCTGGACTTTTCAAAGGGAATGTACTTGGAAGGTCTTGACAGAGGCATAATTGCATGCTCTGGTGTCACATTGCATGAAAAATTAATTGATGCTGTTTATGCTAGCTGGGACTCCTCAAATTTATGA

>Glyma06g38490.2   sequence type=CDS   gene model=Glyma06g38490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGGACAAGTACGCGAAGGAATTGGAGGTGGCTGTTAGGGTGGTCCACGTGGCGTGTGCTCTCTGCGGGAGGGTGCAGGAGAGGCTCCTTGCCACCACCAATGATCACGTTCTAGCCAAGGATGATGATTCTCCCGTTACTGTTGCAGACTTTAGTGTTCAAGCAACTATTAGTTGGTTACTATCAGAAATTTTCGGGGTTCAAAATGTGTCAATCATTGCCGAAGAAGACATACAAACCATCTCCAAGGATGAATCAGCAAGCTTACTGGAAGCTGTTGTGAATACTGTGAATGAGTCTTTAGCTTTTGCATCCAAGTACGGTTTTCAAAGTCCGGAGACAACTCTAGGGACATCTGAAGTTCTTGAGGCCATTGCCCGTTGCAACTCAACTGGAGGCTCCAGGGGAAGATATTGGGTGCTTGACCCTGTTGATGGCACATTAGGATTTGTACGCGGGGATCAGTATGCTATTGCTCTAGCTCTGATTGAGGATGGAAAAGTTGTTCTTGGAGTTCTGGGGTGTCCTAATTACCCAGTAAAGACAGAATGGCTTAGTTATCATTACCAGCATCATCAAACAGCGCCAGAATCATCTCTAACAACTCCTGATACTGGGGGAAAAGGATGTGTATTGTATGCAAGAAAAGGAAGTGGTGAGGCATGGCTGCAGTCATTAATTGATGGAGATAACATGCTAGAATGGTCGAATTGTGCTAGACTTATTCGTGTTTCTTCGATTGAAGATCCGGCATTGGCAACTCTTTGTGAACCAGTGGAAAGGGCAAACTCAAACCATTCATTCACAGCTGGGCTTGCTCACAGTGTGGGACTTAGAAAACAGCCCTTGCGTGTGCACAGCATGGTAAAATACGCAGCAATAGCCCGGGGGGACGCGGAGATATTCATGAAATTCGCAAAGTGTGGCTACAAGGAGAAGATATGGGATCATGCTGCCGGCGTTGTTATTGTTGAGGAGGCTGGTGGTGTGGTAACTGATGCCGGGGGGCGCCCTCTGGACTTTTCAAAGGGAATGTACTTGGAAGGTCTTGACAGAGGCATAATTGCATGCTCTGGTGTCACATTGCATGAAAAATTAATTGATGCTGTTTATGCTAGCTGGGACTCCTCAAATTTATGA

Predicted protein sequences of Glyma06g38490

Limit To All Plant Sequences

>Glyma06g38490.1   sequence type=predicted peptide   gene model=Glyma06g38490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEDKYAKELEVAVRVVHVACALCGRVQERLLATTNDHVLAKDDDSPVTVADFSVQATISWLLSEIFGVQNVSIIAEEDIQTISKDESASLLEAVVNTVNESLAFASKYGFQSPETTLGTSEVLEAIARCNSTGGSRGRYWVLDPVDGTLGFVRGDQYAIALALIEDGKVVLGVLGCPNYPVKTEWLSYHYQHHQTAPESSLTTPDTGGKGCVLYARKGSGEAWLQSLIDGDNMLEWSNCARLIRVSSIEDPALATLCEPVERANSNHSFTAGLAHSVGLRKQPLRVHSMVKYAAIARGDAEIFMKFAKCGYKEKIWDHAAGVVIVEEAGGVVTDAGGRPLDFSKGMYLEGLDRGIIACSGVTLHEKLIDAVYASWDSSNL*

>Glyma06g38490.2   sequence type=predicted peptide   gene model=Glyma06g38490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEDKYAKELEVAVRVVHVACALCGRVQERLLATTNDHVLAKDDDSPVTVADFSVQATISWLLSEIFGVQNVSIIAEEDIQTISKDESASLLEAVVNTVNESLAFASKYGFQSPETTLGTSEVLEAIARCNSTGGSRGRYWVLDPVDGTLGFVRGDQYAIALALIEDGKVVLGVLGCPNYPVKTEWLSYHYQHHQTAPESSLTTPDTGGKGCVLYARKGSGEAWLQSLIDGDNMLEWSNCARLIRVSSIEDPALATLCEPVERANSNHSFTAGLAHSVGLRKQPLRVHSMVKYAAIARGDAEIFMKFAKCGYKEKIWDHAAGVVIVEEAGGVVTDAGGRPLDFSKGMYLEGLDRGIIACSGVTLHEKLIDAVYASWDSSNL*

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