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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G54390 | AT | Annotation by Michelle Graham. TAIR10: HAL2-like | chr5:22086133-22087586 FORWARD LENGTH=373 | SoyBase | E_val: 0 | ISS |
| GO:0006790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sulfur compound metabolic process | SoyBase | N/A | ISS |
| GO:0046854 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol phosphorylation | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0008441 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3'(2'),5'-bisphosphate nucleotidase activity | SoyBase | N/A | ISS |
| KOG1528 | KOG | Salt-sensitive 3'-phosphoadenosine-5'-phosphatase HAL2/SAL1 | JGI | ISS | |
| PTHR20854 | Panther | INOSITOL MONOPHOSPHATASE | JGI | ISS | |
| PTHR20854:SF3 | Panther | DIPHOSPHONUCLEOSIDE PHOSPHOHYDROLASE | JGI | ISS | |
| PF00459 | PFAM | Inositol monophosphatase family | JGI | ISS | |
| UniRef100_B9T8E1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Diphosphonucleoside phosphohydrolase, putative n=1 Tax=Ricinus communis RepID=B9T8E1_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KE06 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KE06_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g38490 not represented in the dataset |
Glyma06g38490 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma12g22680 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g249500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g38490.2 sequence type=transcript gene model=Glyma06g38490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCTTATGTTTTATCATGGACAGAGTGCAATTCAGAGAAACCAAATCCCAGACACCATACAACACAACACAGCACTTTGGTCGTGTTTCGTTTCATCTTTTTCTCCGAGAAAGATCCACCCCACGTTTCAAAATCACTTTTTTTCTCTGCTTTGGGAAATGATGCCATTGTTGTCCCTTGCGAAGCCAAACCCCATCACCACCATCATCATGTAGGAGCGACTCAACAACTCGAGTCTCGCGTTCCTCTTCCTCCCCCTCTGGGCACGTGAGAATTCTCCGATTCTGAAACCGAGGCACGTGACGTTAGCGTGCGTGTGTTTTTGGCTATGGAGGAGGACAAGTACGCGAAGGAATTGGAGGTGGCTGTTAGGGTGGTCCACGTGGCGTGTGCTCTCTGCGGGAGGGTGCAGGAGAGGCTCCTTGCCACCACCAATGATCACGTTCTAGCCAAGGATGATGATTCTCCCGTTACTGTTGCAGACTTTAGTGTTCAAGCAACTATTAGTTGGTTACTATCAGAAATTTTCGGGGTTCAAAATGTGTCAATCATTGCCGAAGAAGACATACAAACCATCTCCAAGGATGAATCAGCAAGCTTACTGGAAGCTGTTGTGAATACTGTGAATGAGTCTTTAGCTTTTGCATCCAAGTACGGTTTTCAAAGTCCGGAGACAACTCTAGGGACATCTGAAGTTCTTGAGGCCATTGCCCGTTGCAACTCAACTGGAGGCTCCAGGGGAAGATATTGGGTGCTTGACCCTGTTGATGGCACATTAGGATTTGTACGCGGGGATCAGTATGCTATTGCTCTAGCTCTGATTGAGGATGGAAAAGTTGTTCTTGGAGTTCTGGGGTGTCCTAATTACCCAGTAAAGACAGAATGGCTTAGTTATCATTACCAGCATCATCAAACAGCGCCAGAATCATCTCTAACAACTCCTGATACTGGGGGAAAAGGATGTGTATTGTATGCAAGAAAAGGAAGTGGTGAGGCATGGCTGCAGTCATTAATTGATGGAGATAACATGCTAGAATGGTCGAATTGTGCTAGACTTATTCGTGTTTCTTCGATTGAAGATCCGGCATTGGCAACTCTTTGTGAACCAGTGGAAAGGGCAAACTCAAACCATTCATTCACAGCTGGGCTTGCTCACAGTGTGGGACTTAGAAAACAGCCCTTGCGTGTGCACAGCATGGTAAAATACGCAGCAATAGCCCGGGGGGACGCGGAGATATTCATGAAATTCGCAAAGTGTGGCTACAAGGAGAAGATATGGGATCATGCTGCCGGCGTTGTTATTGTTGAGGAGGCTGGTGGTGTGGTAACTGATGCCGGGGGGCGCCCTCTGGACTTTTCAAAGGGAATGTACTTGGAAGGTCTTGACAGAGGCATAATTGCATGCTCTGGTGTCACATTGCATGAAAAATTAATTGATGCTGTTTATGCTAGCTGGGACTCCTCAAATTTATGAGCCATTCTTTCTTCTGTCAATGAGGCAAAATTTTGGAAATCTCCACCAAGAGGATGATTGGTACAATTGATGTTGAATATGGTTTGTACAAACTCAAGTCAACCTCTAGCCATCACAACAATACATCCCTTGCTATACTTAATCCCTCCAATTATGTCAATTCTTGTAATACAATACTATTGATATATGACACTGCAGGTTAGGACACTTATCC
>Glyma06g38490.1 sequence type=CDS gene model=Glyma06g38490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGAGGACAAGTACGCGAAGGAATTGGAGGTGGCTGTTAGGGTGGTCCACGTGGCGTGTGCTCTCTGCGGGAGGGTGCAGGAGAGGCTCCTTGCCACCACCAATGATCACGTTCTAGCCAAGGATGATGATTCTCCCGTTACTGTTGCAGACTTTAGTGTTCAAGCAACTATTAGTTGGTTACTATCAGAAATTTTCGGGGTTCAAAATGTGTCAATCATTGCCGAAGAAGACATACAAACCATCTCCAAGGATGAATCAGCAAGCTTACTGGAAGCTGTTGTGAATACTGTGAATGAGTCTTTAGCTTTTGCATCCAAGTACGGTTTTCAAAGTCCGGAGACAACTCTAGGGACATCTGAAGTTCTTGAGGCCATTGCCCGTTGCAACTCAACTGGAGGCTCCAGGGGAAGATATTGGGTGCTTGACCCTGTTGATGGCACATTAGGATTTGTACGCGGGGATCAGTATGCTATTGCTCTAGCTCTGATTGAGGATGGAAAAGTTGTTCTTGGAGTTCTGGGGTGTCCTAATTACCCAGTAAAGACAGAATGGCTTAGTTATCATTACCAGCATCATCAAACAGCGCCAGAATCATCTCTAACAACTCCTGATACTGGGGGAAAAGGATGTGTATTGTATGCAAGAAAAGGAAGTGGTGAGGCATGGCTGCAGTCATTAATTGATGGAGATAACATGCTAGAATGGTCGAATTGTGCTAGACTTATTCGTGTTTCTTCGATTGAAGATCCGGCATTGGCAACTCTTTGTGAACCAGTGGAAAGGGCAAACTCAAACCATTCATTCACAGCTGGGCTTGCTCACAGTGTGGGACTTAGAAAACAGCCCTTGCGTGTGCACAGCATGGTAAAATACGCAGCAATAGCCCGGGGGGACGCGGAGATATTCATGAAATTCGCAAAGTGTGGCTACAAGGAGAAGATATGGGATCATGCTGCCGGCGTTGTTATTGTTGAGGAGGCTGGTGGTGTGGTAACTGATGCCGGGGGGCGCCCTCTGGACTTTTCAAAGGGAATGTACTTGGAAGGTCTTGACAGAGGCATAATTGCATGCTCTGGTGTCACATTGCATGAAAAATTAATTGATGCTGTTTATGCTAGCTGGGACTCCTCAAATTTATGA >Glyma06g38490.2 sequence type=CDS gene model=Glyma06g38490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGAGGACAAGTACGCGAAGGAATTGGAGGTGGCTGTTAGGGTGGTCCACGTGGCGTGTGCTCTCTGCGGGAGGGTGCAGGAGAGGCTCCTTGCCACCACCAATGATCACGTTCTAGCCAAGGATGATGATTCTCCCGTTACTGTTGCAGACTTTAGTGTTCAAGCAACTATTAGTTGGTTACTATCAGAAATTTTCGGGGTTCAAAATGTGTCAATCATTGCCGAAGAAGACATACAAACCATCTCCAAGGATGAATCAGCAAGCTTACTGGAAGCTGTTGTGAATACTGTGAATGAGTCTTTAGCTTTTGCATCCAAGTACGGTTTTCAAAGTCCGGAGACAACTCTAGGGACATCTGAAGTTCTTGAGGCCATTGCCCGTTGCAACTCAACTGGAGGCTCCAGGGGAAGATATTGGGTGCTTGACCCTGTTGATGGCACATTAGGATTTGTACGCGGGGATCAGTATGCTATTGCTCTAGCTCTGATTGAGGATGGAAAAGTTGTTCTTGGAGTTCTGGGGTGTCCTAATTACCCAGTAAAGACAGAATGGCTTAGTTATCATTACCAGCATCATCAAACAGCGCCAGAATCATCTCTAACAACTCCTGATACTGGGGGAAAAGGATGTGTATTGTATGCAAGAAAAGGAAGTGGTGAGGCATGGCTGCAGTCATTAATTGATGGAGATAACATGCTAGAATGGTCGAATTGTGCTAGACTTATTCGTGTTTCTTCGATTGAAGATCCGGCATTGGCAACTCTTTGTGAACCAGTGGAAAGGGCAAACTCAAACCATTCATTCACAGCTGGGCTTGCTCACAGTGTGGGACTTAGAAAACAGCCCTTGCGTGTGCACAGCATGGTAAAATACGCAGCAATAGCCCGGGGGGACGCGGAGATATTCATGAAATTCGCAAAGTGTGGCTACAAGGAGAAGATATGGGATCATGCTGCCGGCGTTGTTATTGTTGAGGAGGCTGGTGGTGTGGTAACTGATGCCGGGGGGCGCCCTCTGGACTTTTCAAAGGGAATGTACTTGGAAGGTCTTGACAGAGGCATAATTGCATGCTCTGGTGTCACATTGCATGAAAAATTAATTGATGCTGTTTATGCTAGCTGGGACTCCTCAAATTTATGA
>Glyma06g38490.1 sequence type=predicted peptide gene model=Glyma06g38490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEDKYAKELEVAVRVVHVACALCGRVQERLLATTNDHVLAKDDDSPVTVADFSVQATISWLLSEIFGVQNVSIIAEEDIQTISKDESASLLEAVVNTVNESLAFASKYGFQSPETTLGTSEVLEAIARCNSTGGSRGRYWVLDPVDGTLGFVRGDQYAIALALIEDGKVVLGVLGCPNYPVKTEWLSYHYQHHQTAPESSLTTPDTGGKGCVLYARKGSGEAWLQSLIDGDNMLEWSNCARLIRVSSIEDPALATLCEPVERANSNHSFTAGLAHSVGLRKQPLRVHSMVKYAAIARGDAEIFMKFAKCGYKEKIWDHAAGVVIVEEAGGVVTDAGGRPLDFSKGMYLEGLDRGIIACSGVTLHEKLIDAVYASWDSSNL* >Glyma06g38490.2 sequence type=predicted peptide gene model=Glyma06g38490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEDKYAKELEVAVRVVHVACALCGRVQERLLATTNDHVLAKDDDSPVTVADFSVQATISWLLSEIFGVQNVSIIAEEDIQTISKDESASLLEAVVNTVNESLAFASKYGFQSPETTLGTSEVLEAIARCNSTGGSRGRYWVLDPVDGTLGFVRGDQYAIALALIEDGKVVLGVLGCPNYPVKTEWLSYHYQHHQTAPESSLTTPDTGGKGCVLYARKGSGEAWLQSLIDGDNMLEWSNCARLIRVSSIEDPALATLCEPVERANSNHSFTAGLAHSVGLRKQPLRVHSMVKYAAIARGDAEIFMKFAKCGYKEKIWDHAAGVVIVEEAGGVVTDAGGRPLDFSKGMYLEGLDRGIIACSGVTLHEKLIDAVYASWDSSNL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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