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Report for Sequence Feature Glyma06g38490

Feature Type:gene_model
Chromosome:Gm06
Start:41430977
stop:41439176
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G54390AT Annotation by Michelle Graham. TAIR10: HAL2-like | chr5:22086133-22087586 FORWARD LENGTH=373 SoyBaseE_val: 0ISS
GO:0006790GO-bp Annotation by Michelle Graham. GO Biological Process: sulfur compound metabolic process SoyBaseN/AISS
GO:0046854GO-bp Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol phosphorylation SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0008441GO-mf Annotation by Michelle Graham. GO Molecular Function: 3'(2'),5'-bisphosphate nucleotidase activity SoyBaseN/AISS
KOG1528 KOG Salt-sensitive 3'-phosphoadenosine-5'-phosphatase HAL2/SAL1 JGI ISS
PTHR20854Panther INOSITOL MONOPHOSPHATASE JGI ISS
PTHR20854:SF3Panther DIPHOSPHONUCLEOSIDE PHOSPHOHYDROLASE JGI ISS
PF00459PFAM Inositol monophosphatase family JGI ISS
UniRef100_B9T8E1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Diphosphonucleoside phosphohydrolase, putative n=1 Tax=Ricinus communis RepID=B9T8E1_RICCO SoyBaseE_val: 0ISS
UniRef100_I1KE06UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KE06_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma12g22680 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g249500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma06g38490.2   sequence type=transcript   gene model=Glyma06g38490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTTATGTTTTATCATGGACAGAGTGCAATTCAGAGAAACCAAATCCCAGACACCATACAACACAACACAGCACTTTGGTCGTGTTTCGTTTCATCTTTTTCTCCGAGAAAGATCCACCCCACGTTTCAAAATCACTTTTTTTCTCTGCTTTGGGAAATGATGCCATTGTTGTCCCTTGCGAAGCCAAACCCCATCACCACCATCATCATGTAGGAGCGACTCAACAACTCGAGTCTCGCGTTCCTCTTCCTCCCCCTCTGGGCACGTGAGAATTCTCCGATTCTGAAACCGAGGCACGTGACGTTAGCGTGCGTGTGTTTTTGGCTATGGAGGAGGACAAGTACGCGAAGGAATTGGAGGTGGCTGTTAGGGTGGTCCACGTGGCGTGTGCTCTCTGCGGGAGGGTGCAGGAGAGGCTCCTTGCCACCACCAATGATCACGTTCTAGCCAAGGATGATGATTCTCCCGTTACTGTTGCAGACTTTAGTGTTCAAGCAACTATTAGTTGGTTACTATCAGAAATTTTCGGGGTTCAAAATGTGTCAATCATTGCCGAAGAAGACATACAAACCATCTCCAAGGATGAATCAGCAAGCTTACTGGAAGCTGTTGTGAATACTGTGAATGAGTCTTTAGCTTTTGCATCCAAGTACGGTTTTCAAAGTCCGGAGACAACTCTAGGGACATCTGAAGTTCTTGAGGCCATTGCCCGTTGCAACTCAACTGGAGGCTCCAGGGGAAGATATTGGGTGCTTGACCCTGTTGATGGCACATTAGGATTTGTACGCGGGGATCAGTATGCTATTGCTCTAGCTCTGATTGAGGATGGAAAAGTTGTTCTTGGAGTTCTGGGGTGTCCTAATTACCCAGTAAAGACAGAATGGCTTAGTTATCATTACCAGCATCATCAAACAGCGCCAGAATCATCTCTAACAACTCCTGATACTGGGGGAAAAGGATGTGTATTGTATGCAAGAAAAGGAAGTGGTGAGGCATGGCTGCAGTCATTAATTGATGGAGATAACATGCTAGAATGGTCGAATTGTGCTAGACTTATTCGTGTTTCTTCGATTGAAGATCCGGCATTGGCAACTCTTTGTGAACCAGTGGAAAGGGCAAACTCAAACCATTCATTCACAGCTGGGCTTGCTCACAGTGTGGGACTTAGAAAACAGCCCTTGCGTGTGCACAGCATGGTAAAATACGCAGCAATAGCCCGGGGGGACGCGGAGATATTCATGAAATTCGCAAAGTGTGGCTACAAGGAGAAGATATGGGATCATGCTGCCGGCGTTGTTATTGTTGAGGAGGCTGGTGGTGTGGTAACTGATGCCGGGGGGCGCCCTCTGGACTTTTCAAAGGGAATGTACTTGGAAGGTCTTGACAGAGGCATAATTGCATGCTCTGGTGTCACATTGCATGAAAAATTAATTGATGCTGTTTATGCTAGCTGGGACTCCTCAAATTTATGAGCCATTCTTTCTTCTGTCAATGAGGCAAAATTTTGGAAATCTCCACCAAGAGGATGATTGGTACAATTGATGTTGAATATGGTTTGTACAAACTCAAGTCAACCTCTAGCCATCACAACAATACATCCCTTGCTATACTTAATCCCTCCAATTATGTCAATTCTTGTAATACAATACTATTGATATATGACACTGCAGGTTAGGACACTTATCC

>Glyma06g38490.1   sequence type=CDS   gene model=Glyma06g38490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGGACAAGTACGCGAAGGAATTGGAGGTGGCTGTTAGGGTGGTCCACGTGGCGTGTGCTCTCTGCGGGAGGGTGCAGGAGAGGCTCCTTGCCACCACCAATGATCACGTTCTAGCCAAGGATGATGATTCTCCCGTTACTGTTGCAGACTTTAGTGTTCAAGCAACTATTAGTTGGTTACTATCAGAAATTTTCGGGGTTCAAAATGTGTCAATCATTGCCGAAGAAGACATACAAACCATCTCCAAGGATGAATCAGCAAGCTTACTGGAAGCTGTTGTGAATACTGTGAATGAGTCTTTAGCTTTTGCATCCAAGTACGGTTTTCAAAGTCCGGAGACAACTCTAGGGACATCTGAAGTTCTTGAGGCCATTGCCCGTTGCAACTCAACTGGAGGCTCCAGGGGAAGATATTGGGTGCTTGACCCTGTTGATGGCACATTAGGATTTGTACGCGGGGATCAGTATGCTATTGCTCTAGCTCTGATTGAGGATGGAAAAGTTGTTCTTGGAGTTCTGGGGTGTCCTAATTACCCAGTAAAGACAGAATGGCTTAGTTATCATTACCAGCATCATCAAACAGCGCCAGAATCATCTCTAACAACTCCTGATACTGGGGGAAAAGGATGTGTATTGTATGCAAGAAAAGGAAGTGGTGAGGCATGGCTGCAGTCATTAATTGATGGAGATAACATGCTAGAATGGTCGAATTGTGCTAGACTTATTCGTGTTTCTTCGATTGAAGATCCGGCATTGGCAACTCTTTGTGAACCAGTGGAAAGGGCAAACTCAAACCATTCATTCACAGCTGGGCTTGCTCACAGTGTGGGACTTAGAAAACAGCCCTTGCGTGTGCACAGCATGGTAAAATACGCAGCAATAGCCCGGGGGGACGCGGAGATATTCATGAAATTCGCAAAGTGTGGCTACAAGGAGAAGATATGGGATCATGCTGCCGGCGTTGTTATTGTTGAGGAGGCTGGTGGTGTGGTAACTGATGCCGGGGGGCGCCCTCTGGACTTTTCAAAGGGAATGTACTTGGAAGGTCTTGACAGAGGCATAATTGCATGCTCTGGTGTCACATTGCATGAAAAATTAATTGATGCTGTTTATGCTAGCTGGGACTCCTCAAATTTATGA

>Glyma06g38490.2   sequence type=CDS   gene model=Glyma06g38490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGGACAAGTACGCGAAGGAATTGGAGGTGGCTGTTAGGGTGGTCCACGTGGCGTGTGCTCTCTGCGGGAGGGTGCAGGAGAGGCTCCTTGCCACCACCAATGATCACGTTCTAGCCAAGGATGATGATTCTCCCGTTACTGTTGCAGACTTTAGTGTTCAAGCAACTATTAGTTGGTTACTATCAGAAATTTTCGGGGTTCAAAATGTGTCAATCATTGCCGAAGAAGACATACAAACCATCTCCAAGGATGAATCAGCAAGCTTACTGGAAGCTGTTGTGAATACTGTGAATGAGTCTTTAGCTTTTGCATCCAAGTACGGTTTTCAAAGTCCGGAGACAACTCTAGGGACATCTGAAGTTCTTGAGGCCATTGCCCGTTGCAACTCAACTGGAGGCTCCAGGGGAAGATATTGGGTGCTTGACCCTGTTGATGGCACATTAGGATTTGTACGCGGGGATCAGTATGCTATTGCTCTAGCTCTGATTGAGGATGGAAAAGTTGTTCTTGGAGTTCTGGGGTGTCCTAATTACCCAGTAAAGACAGAATGGCTTAGTTATCATTACCAGCATCATCAAACAGCGCCAGAATCATCTCTAACAACTCCTGATACTGGGGGAAAAGGATGTGTATTGTATGCAAGAAAAGGAAGTGGTGAGGCATGGCTGCAGTCATTAATTGATGGAGATAACATGCTAGAATGGTCGAATTGTGCTAGACTTATTCGTGTTTCTTCGATTGAAGATCCGGCATTGGCAACTCTTTGTGAACCAGTGGAAAGGGCAAACTCAAACCATTCATTCACAGCTGGGCTTGCTCACAGTGTGGGACTTAGAAAACAGCCCTTGCGTGTGCACAGCATGGTAAAATACGCAGCAATAGCCCGGGGGGACGCGGAGATATTCATGAAATTCGCAAAGTGTGGCTACAAGGAGAAGATATGGGATCATGCTGCCGGCGTTGTTATTGTTGAGGAGGCTGGTGGTGTGGTAACTGATGCCGGGGGGCGCCCTCTGGACTTTTCAAAGGGAATGTACTTGGAAGGTCTTGACAGAGGCATAATTGCATGCTCTGGTGTCACATTGCATGAAAAATTAATTGATGCTGTTTATGCTAGCTGGGACTCCTCAAATTTATGA

>Glyma06g38490.1   sequence type=predicted peptide   gene model=Glyma06g38490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEDKYAKELEVAVRVVHVACALCGRVQERLLATTNDHVLAKDDDSPVTVADFSVQATISWLLSEIFGVQNVSIIAEEDIQTISKDESASLLEAVVNTVNESLAFASKYGFQSPETTLGTSEVLEAIARCNSTGGSRGRYWVLDPVDGTLGFVRGDQYAIALALIEDGKVVLGVLGCPNYPVKTEWLSYHYQHHQTAPESSLTTPDTGGKGCVLYARKGSGEAWLQSLIDGDNMLEWSNCARLIRVSSIEDPALATLCEPVERANSNHSFTAGLAHSVGLRKQPLRVHSMVKYAAIARGDAEIFMKFAKCGYKEKIWDHAAGVVIVEEAGGVVTDAGGRPLDFSKGMYLEGLDRGIIACSGVTLHEKLIDAVYASWDSSNL*

>Glyma06g38490.2   sequence type=predicted peptide   gene model=Glyma06g38490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEDKYAKELEVAVRVVHVACALCGRVQERLLATTNDHVLAKDDDSPVTVADFSVQATISWLLSEIFGVQNVSIIAEEDIQTISKDESASLLEAVVNTVNESLAFASKYGFQSPETTLGTSEVLEAIARCNSTGGSRGRYWVLDPVDGTLGFVRGDQYAIALALIEDGKVVLGVLGCPNYPVKTEWLSYHYQHHQTAPESSLTTPDTGGKGCVLYARKGSGEAWLQSLIDGDNMLEWSNCARLIRVSSIEDPALATLCEPVERANSNHSFTAGLAHSVGLRKQPLRVHSMVKYAAIARGDAEIFMKFAKCGYKEKIWDHAAGVVIVEEAGGVVTDAGGRPLDFSKGMYLEGLDRGIIACSGVTLHEKLIDAVYASWDSSNL*







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