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Report for Sequence Feature Glyma06g38480

Feature Type:gene_model
Chromosome:Gm06
Start:41419777
stop:41421435
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G54400AT Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:22090680-22091998 FORWARD LENGTH=292 SoyBaseE_val: 8.00E-127ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0008168GO-mf Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity SoyBaseN/AISS
PTHR10108Panther METHYLTRANSFERASE JGI ISS
PTHR10108:SF242Panther METHYLTRANSFERASE JGI ISS
PF08241PFAM Methyltransferase domain JGI ISS
UniRef100_B9SID2UniRef Annotation by Michelle Graham. Most informative UniRef hit: S-adenosylmethionine-dependent methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SID2_RICCO SoyBaseE_val: 2.00E-124ISS
UniRef100_I1KE05UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KE05_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma12g22690 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g249400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma06g38480.1   sequence type=CDS   gene model=Glyma06g38480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAAAACAACATCAAGTAGAGATTGGACACGGATCTACCTCATCTACGGAATGGATCAGTGGCAAACCTTCGTCTTTCTTCTCTGTCAAGCGATTCTCTTTTCGGTTCTCTCAATACTTTACCTTCTCTACTTCAATGACATCTCTCACACTTTCCAAAGCCTTCTCAAAATCGTCGCCGTGCCCGGCGGCGCCGCCCGCTTCGCCGCCGGGTTCACGGGATCCGTGATGGCGCTCTCCGCCCTCTGTCTCTTCTACGCGGCGGCGAATTTTTTTTACTCTGCCGTCCCACTCCATTCCGAGATGACCCAACGCATCGTCGATGCAGTCAGTGACTGGTCGACGGTGCGGCAGGTACTCGATCTGGGCTGTTGTGGCCGCGGCATTTTATTGAATGCCGTGGCCGCCCGCCTTAAAAAGGAAGGAAGTTCGGGTCGGGTGATTGGGTTAAGTGGCCCGAACAAGGCCAAATTATCGGCCACGCTTCGGGCTGCTAAGGTAGAGGGTGTGGAGGAATACGTAACGTGTCGGACAGGTGATGCAACAAAACTGCCATTTACGGACGGTAGCTTTGATGCAGTGGTGTCCGGCACATTCGTGCACACGGTGGGGCGGGGGAGTACTCCCGACGTGGCGACAGCGGAGAGAGGGAGGGCGGTGGCAGAGGTGGTGAGGGTGTTGAAGGAGGGTGGGGTTGGGGTGGTGTGGGACCTTGTGCATGTGCCTGAGTATGTGCGACGGTTACAAGACATGAAAATGGAAGACATAAGAGTGAGTGAACGTGTGACGGCGTTCATGGTTAGCAGCCACGTCGTGTCCTTCAAGAAGCCAACTCACCACGTGCATGGCCCACCTGAGGTCAGGTTGGATTGGAGATTCTGCTGA

>Glyma06g38480.1   sequence type=predicted peptide   gene model=Glyma06g38480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKTTSSRDWTRIYLIYGMDQWQTFVFLLCQAILFSVLSILYLLYFNDISHTFQSLLKIVAVPGGAARFAAGFTGSVMALSALCLFYAAANFFYSAVPLHSEMTQRIVDAVSDWSTVRQVLDLGCCGRGILLNAVAARLKKEGSSGRVIGLSGPNKAKLSATLRAAKVEGVEEYVTCRTGDATKLPFTDGSFDAVVSGTFVHTVGRGSTPDVATAERGRAVAEVVRVLKEGGVGVVWDLVHVPEYVRRLQDMKMEDIRVSERVTAFMVSSHVVSFKKPTHHVHGPPEVRLDWRFC*







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