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Report for Sequence Feature Glyma06g38470

Feature Type:gene_model
Chromosome:Gm06
Start:41409188
stop:41415428
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g38470
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G15520AT Annotation by Michelle Graham. TAIR10: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein | chr3:5249739-5252432 REVERSE LENGTH=466 SoyBaseE_val: 0ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0010103GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis SoyBaseN/AISS
GO:0016556GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA modification SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009534GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0009543GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid lumen SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
GO:0031977GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid lumen SoyBaseN/AISS
GO:0003755GO-mf Annotation by Michelle Graham. GO Molecular Function: peptidyl-prolyl cis-trans isomerase activity SoyBaseN/AISS
PTHR11071Panther CYCLOPHILIN JGI ISS
PTHR11071:SF75Panther PEPTIDYL-PROLYL CIS-TRANS ISOMERASE JGI ISS
PF00160PFAM Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JGI ISS
UniRef100_B9SW20UniRef Annotation by Michelle Graham. Most informative UniRef hit: Peptidyl-prolyl cis-trans isomerase, putative n=1 Tax=Ricinus communis RepID=B9SW20_RICCO SoyBaseE_val: 0ISS
UniRef100_I1KE04UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KE04_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g38470
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g38470
ParalogEvidenceComments
Glyma12g22700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g38470 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g249300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g38470
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g38470
>Glyma06g38470.1   sequence type=CDS   gene model=Glyma06g38470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTTCCCTCTCTCTCCCTCCTTCAACCCCTCCATCGCTCGAAACCGAATCGCGTGCTTCTCGAAGAAGCAGCACCGCCACGTCATCACAAAGGATACGGAAGTGGTGGTGGTAGACAGAGACACGGCGCGTGCCACGTCAGCGGGCGCGATGCTGGAGAGGATAATGAAGCGGTTGAGGAGTGTGGCGGTGGTTCCGATCGTGATTGCGTCGGTTCAGATAAGCGCGTTGGTGGCGCCGTTAGTTGATTACGTGGCGTCTCCGGGTGCCGCCGAAGCGGTTCTGTATTCGCCGGATACGAAGGTTCCGAGGACGGGAGAAGTTGCTCTCCGGAAAGCCATTCCTGCCAATGCTAACATGAAGGCTATTCAGGACACTCTTGAAGATATTTCGTACCTGTTGAGGATTCCGCAGAGAAAACCGTATGGAACAATGGAGGGGAATGTGAAGAAAGCTTTGAAGATAGCAGTAGATGAAAAGAATTCTATATTGGCTAGTATACCAGCAGAACTGAAGGAAAGGGCCTCTTTGGTACATGCGTCTCTAATAGAGGGAAAGGGGGGCTTGCAAACTCTACTTCAATCTATAAAGGAACAGGATGCAGATAAAGTATCTGTGAACCTTGCATCTACACTGGATACGGTAGCAGAGCTGGAGTTGTTACAGGCACCAGGATTATCATTTTTGTTGCCAGAGCAATATGCACAACAATATCCACGGCTTTCAGGGAGAGGAACTGTTGCGTTCACCATTGAGAAAGGAGATGGTTCAACATTTTCTCCAGTTGGGGGAGAGCAGAAAAATACTGCCACCATTCAGGTTGTTATTGATGGATACTCAGCTCCACTAACTGCAGGGAATTTTGCAAAACTGGTGATGGATGGAGCCTATAATGGCACAAAGCTCAACTGTATCAACCAAGCTGTTATCTCAGATAATGGAGTTGATAAGAACACTGGTTATAGTGTTCCCTTGGAAATAATGCCCTCTGGACAATTTGAGCCCCTTTACAAAACAACATTAAGTGTGCAGGATGGAGAACTGCCGGTTCTTCCGCTATCTGTTTATGGGGCACTTGCTATGGCTCACAGCGAAGCCTCGGATGAGTATTCATCGCCTTATCAGTTTTTCTTCTATCTCTATGATAAACGAAGTGCTGGTTTGGGAGGGATATCATTTGATGAAGGACAATTTTCAGTTTTTGGATACACGACTACCGGGAGAGACATTCTACCCCAAATAAAAACTGGTGATGTTATTCGTTCTGCAAAGCTTATTGAAGGCCAAGACCGTCTTGTATTGCCGAAGGAAAGTTGA
Predicted protein sequences of Glyma06g38470
>Glyma06g38470.1   sequence type=predicted peptide   gene model=Glyma06g38470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFPLSPSFNPSIARNRIACFSKKQHRHVITKDTEVVVVDRDTARATSAGAMLERIMKRLRSVAVVPIVIASVQISALVAPLVDYVASPGAAEAVLYSPDTKVPRTGEVALRKAIPANANMKAIQDTLEDISYLLRIPQRKPYGTMEGNVKKALKIAVDEKNSILASIPAELKERASLVHASLIEGKGGLQTLLQSIKEQDADKVSVNLASTLDTVAELELLQAPGLSFLLPEQYAQQYPRLSGRGTVAFTIEKGDGSTFSPVGGEQKNTATIQVVIDGYSAPLTAGNFAKLVMDGAYNGTKLNCINQAVISDNGVDKNTGYSVPLEIMPSGQFEPLYKTTLSVQDGELPVLPLSVYGALAMAHSEASDEYSSPYQFFFYLYDKRSAGLGGISFDEGQFSVFGYTTTGRDILPQIKTGDVIRSAKLIEGQDRLVLPKES*






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