Glyma06g38400 - SoyBase

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Report for Sequence Feature Glyma06g38400

Feature Type:	gene_model
Chromosome:	Gm06
Start:	41292461
stop:	41295912
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g38400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G27420	AT	Annotation by Michelle Graham. TAIR10: ABC-2 type transporter family protein \| chr4:13712434-13714797 REVERSE LENGTH=638	SoyBase	E_val: 0	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
GO:0042626	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances	SoyBase	N/A	ISS
KOG0061	KOG	Transporter, ABC superfamily (Breast cancer resistance protein)	JGI		ISS
PTHR19241	Panther	ATP-BINDING CASSETTE TRANSPORTER	JGI		ISS
PTHR19241:SF23	Panther	STEROLIN-2 RELATED	JGI		ISS
PF00005	PFAM	ABC transporter	JGI		ISS
PF01061	PFAM	ABC-2 type transporter	JGI		ISS
UniRef100_B9T6P5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP-binding cassette transporter, putative n=1 Tax=Ricinus communis RepID=B9T6P5_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KE00	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KE00_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g38400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g38400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g248800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g38400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g38400

Limit To All Plant Sequences

>Glyma06g38400.1   sequence type=CDS   gene model=Glyma06g38400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAACATGGAGTCTCAAACTTCTTACAAAGCAACAGTGCAGGAGGAAGAATCTGACATCTTTCTCACGAGAAATTCTCCAGTAACTCTCAAGTTCCATGATGTTATCTATAAAATTAAGACCACAAAGTGGGGATTTCTTAAGAACACCAAGGCAGAAGAGAAAGTAATATTGAATGGAGTGACAGGCATGGCTCAATCTGGTGAAATTCTTGCCATGTTAGGTCCCTCAGGAAGTGGCAAAACAACTTTGCTAGCAGCACTGGGAGGCCGGCTCGGAGGGAAACTCCATGGAAGCATAACATACAACGGCAAAGCCTTCTCAAATGTAATGAAGAGGAACACAGGCTTTGTCACACAAGATGATATCCTCTATCCCCACTTGACTGTGGTCGAAACTGTAGTGTTCACTGCTCTTCTGAGATTGCCAAAGAGTTTCACCACAAAGGAGAAAATTGTGCATGCAAAATCTGTGATGGCTCAACTTGGTTTAACCAAGTGCAAGGATAGCATCATTGGTGGACCACTTCTGAGAGGGATTTCGGGAGGGGAGAGAAAAAGGGTTAGCATTGGACAAGAAATGCTCATAAATCCAAGCTTGTTGTTTCTTGATGAGCCAACCTCTGGCTTAGACTCAACAATAGCTAAGAGAATTGTCTCAACTTTGTGGGAGCTTGCAAATGGAGGGAGAACTGTTGTCATGACCATTCACCAACCTTCAAGTAGGATGTACTGCATGTTTCACAAGGTGTTGCTGCTTTCAGAAGGGAACCTTTTGTATTTTGGAAAAGGGTCTAAAGCTATGGAATATTTTTCTAGCATTGGATATGCACCAATGACTATGGCCATGAACCCCTCAGACTTCCTTTTGGATCTTTCAAATGGTGTCTACACTGATCAATCGAATGAGGACCATGCCTTAAATAAGCGCAAGTTGATTTCTGCATATAGGAACTACTTCGACGCAAAACTGCAGCCAGTGCTTCATGAAATAACTGAATATGATAAATGTAAGGGTAGAATTGAAGACAATGGCTTTGGGGAATGGCCTACCAGTTGGCCACAGCAATTCCTTGTGCTGCTAAAAAGAGATGTCAAAGAGAGAAAGTACGCATCATTCTCTGGCATGCGGATCTGTCAGGTCCTTATGGTTGCTCTTATTGCAGGACTACTATGGTATAAGTCTGACATTTCACACTTGCAGGATCAGATTGGGATTCTATTCTTCATTTCTAGCTTCTGGAGCAGCATGGCTCTCTTCCAAGCAATATTCACCTTCCCCCAAGAGCTAACAATTCTTAAGAAGGAACGATCCTCTGGAATGTACAGGCTCTCCTCATATTTCATGTCAAGAATGGTTGGTGACCTTCCAATGGAGCTTGGGCTTCCTACCATATTTCTTGCCATAGTCTATTGGATGGCTGGGCTGAAACCTAATGTGGCAAACTTCATATACACAATGCTCAGTGTCTTTCTCAATGTGCTAGTTTCACAAGGGCTAGGCCTTGCCATTAGTGCTATTGTAATGGAACAGAAATCTGCATCCACACTGGCCTCGGTGATCATGCCAACTTCCATTCTGCTTGGTGGATACTATAATCAACATGTGCCAAAATTTATAGCATGGCTGAAATACTTCTCCACCCACTACTACGTGTACCATCTTGTGATAGGGTCTCAGTATGGCACTAGTGACACATACCCTTGTTCTAATGGCCAGTGTTTGGTTGCAGAACATCCTGTGATTAAGCAAGTGGGGCTACATTTGCAAGGGAAAATCACGGCTGCATTGGCTCTGTTCATAATGCTAATAGGCTTCAGACTTGTGGCTTATCTTGCTCTGATGAGGATTGGGGTGACAAAGAAGGCTTAG

Predicted protein sequences of Glyma06g38400

Limit To All Plant Sequences

>Glyma06g38400.1   sequence type=predicted peptide   gene model=Glyma06g38400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENMESQTSYKATVQEEESDIFLTRNSPVTLKFHDVIYKIKTTKWGFLKNTKAEEKVILNGVTGMAQSGEILAMLGPSGSGKTTLLAALGGRLGGKLHGSITYNGKAFSNVMKRNTGFVTQDDILYPHLTVVETVVFTALLRLPKSFTTKEKIVHAKSVMAQLGLTKCKDSIIGGPLLRGISGGERKRVSIGQEMLINPSLLFLDEPTSGLDSTIAKRIVSTLWELANGGRTVVMTIHQPSSRMYCMFHKVLLLSEGNLLYFGKGSKAMEYFSSIGYAPMTMAMNPSDFLLDLSNGVYTDQSNEDHALNKRKLISAYRNYFDAKLQPVLHEITEYDKCKGRIEDNGFGEWPTSWPQQFLVLLKRDVKERKYASFSGMRICQVLMVALIAGLLWYKSDISHLQDQIGILFFISSFWSSMALFQAIFTFPQELTILKKERSSGMYRLSSYFMSRMVGDLPMELGLPTIFLAIVYWMAGLKPNVANFIYTMLSVFLNVLVSQGLGLAISAIVMEQKSASTLASVIMPTSILLGGYYNQHVPKFIAWLKYFSTHYYVYHLVIGSQYGTSDTYPCSNGQCLVAEHPVIKQVGLHLQGKITAALALFIMLIGFRLVAYLALMRIGVTKKA*

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