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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma06g38390

Feature Type:gene_model
Chromosome:Gm06
Start:41263318
stop:41266293
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g38390
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G52900AT Annotation by Michelle Graham. TAIR10: Toll-Interleukin-Resistance (TIR) domain family protein | chr1:19702211-19702916 REVERSE LENGTH=199 SoyBaseE_val: 5.00E-62ISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
PF01582PFAM TIR domain JGI ISS
UniRef100_B9T1A0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane receptor, putative n=1 Tax=Ricinus communis RepID=B9T1A0_RICCO SoyBaseE_val: 2.00E-75ISS
UniRef100_I1KDZ9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDZ9_SOYBN SoyBaseE_val: 3.00E-150ISS

Expression Patterns of Glyma06g38390
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g38390 not represented in the dataset
Glyma06g38390 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g38390 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g248700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g38390
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g38390
>Glyma06g38390.1   sequence type=CDS   gene model=Glyma06g38390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATCGTTCCTTGTCCATGAACATCCGATCAAGGTTTCTCAGCCACCAAATGATATCAGAGGTGAATCAAGTGGTGAGAAATGGAGTTATTTTGGATCCATGTGACGTGTTCATAAACCACAGAAGCTTGGACACAAAAACAACAGTAGCCGCTCCTCTTTATGACCATCTCCGCAGACATGGCTTTCACCCTTTTTTGGACAACAAAACAATGAAACCAGGTGACAAACTGTTTGATAAGATCAACAGGGCAATCTTGGAGTGCAAGATAGGGTTGGCAGTGATGTCACCGCGCTACTGTGACTCATACTTTTGCCTTCATGAGCTTGCCCTTCTCATGGAGTGCAAGAAGAAGGTGATACCAATCTTTGTTGACATTAAGCCATCTCAATTACGCGTCATCAACAACAAAAAATGGACCCTAGAAGATCAACGGCGTTTCAAATTGGCTATTGAAGAAGCAAAGTACACTGTGGGACTCACCTTCAACTCTTTGCAAGGGAACTTCTCCGGTATTGTGACAAGTGCTTCTGATATCATCATTGAGAGCTTGATAGAGTTTGAGGATGAAGAAGCGCAGATGCATCAATATTCGTACTTGCCAATTAGCTAA
Predicted protein sequences of Glyma06g38390
>Glyma06g38390.1   sequence type=predicted peptide   gene model=Glyma06g38390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHRSLSMNIRSRFLSHQMISEVNQVVRNGVILDPCDVFINHRSLDTKTTVAAPLYDHLRRHGFHPFLDNKTMKPGDKLFDKINRAILECKIGLAVMSPRYCDSYFCLHELALLMECKKKVIPIFVDIKPSQLRVINNKKWTLEDQRRFKLAIEEAKYTVGLTFNSLQGNFSGIVTSASDIIIESLIEFEDEEAQMHQYSYLPIS*






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