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Report for Sequence Feature Glyma06g38270

Feature Type:gene_model
Chromosome:Gm06
Start:41138119
stop:41138805
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g38270
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G14740AT Annotation by Michelle Graham. TAIR10: vaculolar sorting receptor 3 | chr2:6308895-6312303 FORWARD LENGTH=628 SoyBaseE_val: 5.00E-45ISS
GO:0006623GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole SoyBaseN/AISS
GO:0006886GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular protein transport SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0005887GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0017119GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi transport complex SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
PTHR22765Panther RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING JGI ISS
PTHR22765:SF8Panther VSR-2 (VACUOLAR SORTING RECEPTOR 2), CALCIUM ION B JGI ISS
UniRef100_G7K0X0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar-sorting receptor n=1 Tax=Medicago truncatula RepID=G7K0X0_MEDTR SoyBaseE_val: 8.00E-46ISS
UniRef100_I1LFP5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LFP5_SOYBN SoyBaseE_val: 3.00E-49ISS

Expression Patterns of Glyma06g38270
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g38270 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma06g38270
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g38270
>Glyma06g38270.1   sequence type=CDS   gene model=Glyma06g38270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTAATATCGAAAAGATTGAAAAGTGCATGGGAGATCCAGATGCCAATACTGATAATCCTATTGGAAAGGGATCGCGAGGTGATGTTACCATATTGCCTACTCTTGTTAAAGGTGTTGTTCTAAAGGCTATATGTTATGGGTTTGAGGAAACTACTGAACCAGCTATTTGCTTGAGCAGTGGCAAGTATGTGGAGACAAATGAGTGCTTGACAAACAATGGTGGTTGCTGGCAGGATAAAGCAGCTAACATCACTGCTTGCAAGGATACATTCCATGGGAGAGTATGTGAATGCCCTCTGGTTGATGGT
Predicted protein sequences of Glyma06g38270
>Glyma06g38270.1   sequence type=predicted peptide   gene model=Glyma06g38270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
LNIEKIEKCMGDPDANTDNPIGKGSRGDVTILPTLVKGVVLKAICYGFEETTEPAICLSSGKYVETNECLTNNGGCWQDKAANITACKDTFHGRVCECPLVDG






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