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Report for Sequence Feature Glyma06g38250

Feature Type:gene_model
Chromosome:Gm06
Start:41118028
stop:41119027
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g38250
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G02960AT Annotation by Michelle Graham. TAIR10: Ribosomal protein S12/S23 family protein | chr5:693280-694396 REVERSE LENGTH=142 SoyBaseE_val: 8.00E-41ISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0015935GO-cc Annotation by Michelle Graham. GO Cellular Compartment: small ribosomal subunit SoyBaseN/AISS
GO:0022626GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome SoyBaseN/AISS
GO:0022627GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
PTHR11652Panther 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER JGI ISS
PTHR11652:SF2Panther UNCHARACTERIZED JGI ISS
PF00164PFAM Ribosomal protein S12 JGI ISS
UniRef100_B9SD33UniRef Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein S23, putative n=1 Tax=Ricinus communis RepID=B9SD33_RICCO SoyBaseE_val: 1.00E-42ISS
UniRef100_I1KDZ3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KDZ3_SOYBN SoyBaseE_val: 3.00E-48ISS

Expression Patterns of Glyma06g38250
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g38250 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma06g38250
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g38250
>Glyma06g38250.2   sequence type=CDS   gene model=Glyma06g38250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCTGGCTCAAGTCTCATTGCAGGAGGCAAAGGTGGGCTGGCAAGTCATACAAGAATTCCCATCTTGGAAATGAATGGAAGAAACTTTTTGCTGGTTCATCCCATGCCAAGGGAATTGTCCTTGAAAAGATAGGTATTGAGGCTAAGCAGCCTAACTTTGCCATTGATAAGTGTGCCAGGGTTCAACTTATCAAGAATTGGAAGAAGATTGCCGCTTTTTTCCCTAATGATGGTTTCTTGAACTACATTGAAGCAAATCTGAGGAAAATTAGTTCCGTGAAGAAAATCCAAGCCGAGGCACTTCCGTAA
Predicted protein sequences of Glyma06g38250
>Glyma06g38250.2   sequence type=predicted peptide   gene model=Glyma06g38250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
IWLKSHCRRQRWAGKSYKNSHLGNEWKKLFAGSSHAKGIVLEKIGIEAKQPNFAIDKCARVQLIKNWKKIAAFFPNDGFLNYIEANLRKISSVKKIQAEALP*






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