Glyma06g38250 - SoyBase

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Report for Sequence Feature Glyma06g38250

Feature Type:	gene_model
Chromosome:	Gm06
Start:	41118028
stop:	41119027
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g38250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G02960	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein S12/S23 family protein \| chr5:693280-694396 REVERSE LENGTH=142	SoyBase	E_val: 8.00E-41	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0015935	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: small ribosomal subunit	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0022627	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
PTHR11652	Panther	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	JGI		ISS
PTHR11652:SF2	Panther	UNCHARACTERIZED	JGI		ISS
PF00164	PFAM	Ribosomal protein S12	JGI		ISS
UniRef100_B9SD33	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein S23, putative n=1 Tax=Ricinus communis RepID=B9SD33_RICCO	SoyBase	E_val: 1.00E-42	ISS
UniRef100_I1KDZ3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KDZ3_SOYBN	SoyBase	E_val: 3.00E-48	ISS

Expression Patterns of Glyma06g38250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g38250 not represented in the dataset	Glyma06g38250 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g38250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma06g38250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g38250

Limit To All Plant Sequences

>Glyma06g38250.2   sequence type=CDS   gene model=Glyma06g38250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCTGGCTCAAGTCTCATTGCAGGAGGCAAAGGTGGGCTGGCAAGTCATACAAGAATTCCCATCTTGGAAATGAATGGAAGAAACTTTTTGCTGGTTCATCCCATGCCAAGGGAATTGTCCTTGAAAAGATAGGTATTGAGGCTAAGCAGCCTAACTTTGCCATTGATAAGTGTGCCAGGGTTCAACTTATCAAGAATTGGAAGAAGATTGCCGCTTTTTTCCCTAATGATGGTTTCTTGAACTACATTGAAGCAAATCTGAGGAAAATTAGTTCCGTGAAGAAAATCCAAGCCGAGGCACTTCCGTAA

Predicted protein sequences of Glyma06g38250

Limit To All Plant Sequences

>Glyma06g38250.2   sequence type=predicted peptide   gene model=Glyma06g38250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
IWLKSHCRRQRWAGKSYKNSHLGNEWKKLFAGSSHAKGIVLEKIGIEAKQPNFAIDKCARVQLIKNWKKIAAFFPNDGFLNYIEANLRKISSVKKIQAEALP*

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