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Report for Sequence Feature Glyma06g38160

Feature Type:gene_model
Chromosome:Gm06
Start:40988897
stop:40992184
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g38160
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G54190AT Annotation by Michelle Graham. TAIR10: protochlorophyllide oxidoreductase A | chr5:21991183-21992773 REVERSE LENGTH=405 SoyBaseE_val: 0ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0015995GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009534GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0016630GO-mf Annotation by Michelle Graham. GO Molecular Function: protochlorophyllide reductase activity SoyBaseN/AISS
KOG1208 KOG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) JGI ISS
PTHR24316Panther FAMILY NOT NAMED JGI ISS
PTHR24316:SF100Panther JGI ISS
PF00106PFAM short chain dehydrogenase JGI ISS
UniRef100_Q9LKH8UniRef Annotation by Michelle Graham. Most informative UniRef hit: NADPH-protochlorophyllide oxidoreductase n=1 Tax=Vigna radiata var. radiata RepID=Q9LKH8_VIGRR SoyBaseE_val: 0ISS
UniRef100_UPI00020819F9UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00020819F9 related cluster n=1 Tax=unknown RepID=UPI00020819F9 SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g38160
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g38160 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g247100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g38160
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g38160
>Glyma06g38160.1   sequence type=CDS   gene model=Glyma06g38160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTTCAGGCTGCTTCCTTGGTTTCTGCTTCTTTTTCTATTGCTAAAGAGGGAAAGTCTGGTGTATCTCTCAGGGACACCACAATGTTTGGTGTTTCATTGTCGGATACTCTCAAATCTGACTTCAGCTCTCCCTCATCGACTTGCAAAAGGGAATTCCAACAAAAATTTGGCCCTTTGAGGGTTCAGTCAGTGGCAACAACAACTCCAGGAGTCACCAAGGCTTCACCAGAAGGCAAGAAAACTTTGAGGAAAGGCAGTGTTATTATCACTGGGGCTTCCTCTGGATTAGGCCTGGCCACTGCTAAGGCTTTGGCTGAGACAGGAAAGTGGCATGTGATAATGGCCTGCCGGGATTTCCTCAAAGCCGAAAGGGCTGCGAAATCTGCCGGCATTGCTAAGGAAAACTACACTATTATGCATTTGGACCTTGCATCTCTTGATAGTGTGAGGCAATTTGTTGATAACTTTAGGCAATCAGGCCGGCCACTGGATGTGCTTGTTTGCAATGCTGCGGTTTACTTGCCAACTGCCAGGGAACCTACATATACTGCTGATGGCTTTGAACTCAGTGTTGGAACCAACCATCTCGGGCATTTCCTCCTTTCGCGCCTTTTGCTTGACGACTTGAACAAATCTGACTACCCTTCGAAGCGGTTGATCATTGTAGGCTCAATCACAGGAAACACCAACACATTGGCTGGAAATGTGCCACCCAAGGCTAACCTTGGTGACATGAGGGGACTAGCTGGAGGCTTGAATGGGCTAAACACTTCAGCCATGATAGATGGAGGATCCTTTGACGGCGCTAAGGCATACAAGGACAGCAAAGTCTGCAACATGCTTACAATGCAAGAATTCCACAGAAGATACCATGATGAAACTGGGATCACATTTGCTTCCCTTTACCCAGGTTGCATCGCCACAACAGGCTTGTTCAGAGAGCACATTCCCTTGTTCAGACTTCTCTTCCCTCCATTCCAAAAGTACATAACCAAGGGCTTTGTCTCAGAAGATGAATCAGGAAAGAGACTTGCACAGGTTGTGAGTGATCCAAGCCTAACAAAATCAGGTGTTTACTGGAGCTGGAACGCGGCCTCTGCTTCGTTTGAAAACCAATTGTCCCAAGAAGCCAGCGATGCAGATAAGGCTCGCAAGGTTTGGGAGATTAGTGAGAAACTTACTGGTTTGGCTTAA
Predicted protein sequences of Glyma06g38160
>Glyma06g38160.1   sequence type=predicted peptide   gene model=Glyma06g38160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALQAASLVSASFSIAKEGKSGVSLRDTTMFGVSLSDTLKSDFSSPSSTCKREFQQKFGPLRVQSVATTTPGVTKASPEGKKTLRKGSVIITGASSGLGLATAKALAETGKWHVIMACRDFLKAERAAKSAGIAKENYTIMHLDLASLDSVRQFVDNFRQSGRPLDVLVCNAAVYLPTAREPTYTADGFELSVGTNHLGHFLLSRLLLDDLNKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDMRGLAGGLNGLNTSAMIDGGSFDGAKAYKDSKVCNMLTMQEFHRRYHDETGITFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGFVSEDESGKRLAQVVSDPSLTKSGVYWSWNAASASFENQLSQEASDADKARKVWEISEKLTGLA*






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