Report for Sequence Feature Glyma06g38120
Feature Type: gene_model
Chromosome: Gm06
Start: 40947964
stop: 40955402
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g38120
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G15380 AT
Annotation by Michelle Graham. TAIR10: Plasma-membrane choline transporter family protein | chr3:5193319-5196435 FORWARD LENGTH=700
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0009506 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma
SoyBase N/A ISS
KOG1362
KOG
Choline transporter-like protein
JGI ISS
PTHR12385 Panther
CTL TRANSPORTER
JGI ISS
PTHR12385:SF5 Panther
gb def: cg1311 gene product [drosophila melanogaster]
JGI ISS
PF04515 PFAM
Plasma-membrane choline transporter
JGI ISS
UniRef100_I1KDY6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDY6_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q94AN2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Plasma-membrane choline transporter family protein n=1 Tax=Arabidopsis thaliana RepID=Q94AN2_ARATH
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g38120
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g38120
Paralog Evidence Comments
Glyma12g23180 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g38120 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g246600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g38120
Coding sequences of Glyma06g38120
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g38120.1 sequence type=CDS gene model=Glyma06g38120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGGGGTCCTTTGGGTGCAGTAATAGGAAGGTACCCATCAAGTGATGGAGTTACCCAAATGGGTGGAATCATAAGGCACAACAGGAAATGCAGGGACATCATTGTTCTTGTGATCTTCATAGCTTTTTGGATAGCAATGATTGTCAACTCCAGCTTTGGTTTCAACCAAGGAAACCCACTGAGGCTTACTTATGGACTTGACTACAAAGGGAATGTGTGTGGGGACAAGCATGCACACCCTGGCCTTAGTGAATTAGAGCTCAGATATTGGCAAAATCCTAATCAGGTTTATCAGAGTGGATTGAAGGATAGCCAATTCAAACTGGCTGATGCCCGCAGTATATGCTTGTCGGAGTGCCCTATGCCTTCAGAAGATTCCCTTAATTGGGTGTGTGATTATCCTGAAGGAGATATTCGTCTTTCGATGAAAGATTGGATTAATAGGAACTATGATTATTTTGAGTTCCTTACACCAGAAATGAGAAACTCGTCTCTTCAACTACAGGGTCCTTGTTATCCTGTCATATTTCCCACTGTAAATGTTTATTGGAGTTGCCAATTTATTGCTCGGGCGTCAAATACATCTTTGAAGCATTGGCAGCAGATGGGTGGAGTTAACATCAACGAAGACATTGTTATTGACAAGTCAATTCACAAGTCTATTAATTCTCGGTCAGCTGTCTTAGAGAGATACATGGCAGACATAGGAAAGGCATGGCCTGTGCTGATTGTCTGCGGAGGGATTTTGCCTCTTTTTCTGTCTGTGATTTGGCTGATGATGATTCGACATTTTGTTGCTGCTATGCCTTGGATAACAGTTGTTCTCTTTAATGTTCTAATAATATCTGTCACAATGTTCTACTACCTAAAAGCTGGATGGATTGGAAATGATGCGATTTCTCCCATCATTGGTGAGCATGACCCATACATTAGTGTATATGGGAGGGAGCTGACTCATATACGAGTTGTCACTATACTTATGACCTTTATCATGGTTGTTGCCATTCTTACATCAATTGCCATTGTTCGCCGCATCCTTATGGCAACATCTGTCCTGAAAGTTGCTGCAAAAGTGATAGGAGAAGTTCAAGCCCTCATTATTTTCCCTCTCATACCATATACTGTCCTTGCAGTCTTTTACATGTTCTGGATTTCAGCTGCTCTCCATTTGTTCAGCTCTGGCCAGGTTGTTCAGAATAATTGCAACTCTAACTGCTGCACATATGATCTTATTGCAAAACGGGTAAACTGTGATCGTTGTTGTGGTTATAGCATTCATTACACACCACATATTGGAGTTGCCATCCTTTTCCACCTATTTGGGTGTTATTGGGCTACACAATTTTTCATAGCTTGCTCCTCAACAGTGATTGCTGGGTCTGTCGCCTCATATTACTGGGCACGCGGTGAAACATCTCCAGAAATTCCTTTTCTTTCTGTCTTTTCCTCCATGAAGAGGCTTATGCGTTACAGTCTTGGGTCTGTGGCTCTTGGCTCTCTGATTGTATCATTCGTAGAATCAATCCGCTTTCTGCTTGAAGCTATTCGTCGTAAACTGAAAGTCTCAAGTCATGGGCATGACAGCTGCTTAGGCAAGGCTGCATACCAATTTTCTCAATGTTTTCTCAGGTGTATTGAATGGACCATCAAGTCAGTAAACCGAAATGGTTACATCATGATTGCTATAACTGGCAAAAGTTTCTTTAGCGCTTCTTTTATTGCAACAGAACTGATCATGAATAACATTCTAAAGATTGGCCGGCTTAACGTGATAGGAGATGTCATTTTGTTCCTTGGAAAACTGTGTGTCAGCCTCTCATGTGCTTTGTTTGCGTTCCTCATGTTGGACACACACAAGTACAACTCTGCTCATAACAAGACCTCATCTCCACTCTTACCTGTTGTGGTTTGCTGGGCTCTTGGATACATTGTTGCAACCCTTTTCTTTGCAGTTGTGGAGATGTCAATTGATACCATAGTTCTCTCATTCTGCCAGGATTCTGAAGAGCACCAAGGGACAGCACAGTATGCTCCACCCCTTCTCGTTGAGACACTCAGTGACCAAAATGAGATGCAGAGACTCACACAAGGACCCTAA
Predicted protein sequences of Glyma06g38120
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g38120.1 sequence type=predicted peptide gene model=Glyma06g38120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRGPLGAVIGRYPSSDGVTQMGGIIRHNRKCRDIIVLVIFIAFWIAMIVNSSFGFNQGNPLRLTYGLDYKGNVCGDKHAHPGLSELELRYWQNPNQVYQSGLKDSQFKLADARSICLSECPMPSEDSLNWVCDYPEGDIRLSMKDWINRNYDYFEFLTPEMRNSSLQLQGPCYPVIFPTVNVYWSCQFIARASNTSLKHWQQMGGVNINEDIVIDKSIHKSINSRSAVLERYMADIGKAWPVLIVCGGILPLFLSVIWLMMIRHFVAAMPWITVVLFNVLIISVTMFYYLKAGWIGNDAISPIIGEHDPYISVYGRELTHIRVVTILMTFIMVVAILTSIAIVRRILMATSVLKVAAKVIGEVQALIIFPLIPYTVLAVFYMFWISAALHLFSSGQVVQNNCNSNCCTYDLIAKRVNCDRCCGYSIHYTPHIGVAILFHLFGCYWATQFFIACSSTVIAGSVASYYWARGETSPEIPFLSVFSSMKRLMRYSLGSVALGSLIVSFVESIRFLLEAIRRKLKVSSHGHDSCLGKAAYQFSQCFLRCIEWTIKSVNRNGYIMIAITGKSFFSASFIATELIMNNILKIGRLNVIGDVILFLGKLCVSLSCALFAFLMLDTHKYNSAHNKTSSPLLPVVVCWALGYIVATLFFAVVEMSIDTIVLSFCQDSEEHQGTAQYAPPLLVETLSDQNEMQRLTQGP*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
