Glyma06g38110 - SoyBase

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Report for Sequence Feature Glyma06g38110

Feature Type:	gene_model
Chromosome:	Gm06
Start:	40933720
stop:	40937736
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g38110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G21705	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr4:11533257-11534817 REVERSE LENGTH=492	SoyBase	E_val: 2.00E-133	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF55	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_B9SNN7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SNN7_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KDY5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KDY5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g38110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g38110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g246500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g38110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g38110

Limit To All Plant Sequences

>Glyma06g38110.2   sequence type=CDS   gene model=Glyma06g38110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGTTAGCGCCGTTATTCTCCGCGTCTCGGAGCCTCGCCGCTGCAGCAGCATTTCTGCGCCACTGCTCCACCGCCGCCACGACGAACCGAAGAAACCTCTATTCCCGAATCAGCCCCCTCGGAGACCCTTCCATCAGCGTGGTTCCCGTTCTCGACGAGTGGATCGAAGAGGGTAACGCCGTCGACGGGCCCCACCTCCATCACATCATCAAAATCCTGCGTACCCGCAATCGCAACACCCAAGCACTCGAGGTTTCTGAGTGGATGAGTAGCAAAGGGCTCCCAATTTCCTCACGTGACCAAGCAGTGCAGCTGGATCTCATTGGTAGAGTTCATGGAGTGGAGAGTGCAGAGAGGTATCTTCAGAGTTTGAGTGATGGAGACAAAACTTGGAAGGTTCATGGTGCTCTTTTGAATTGTTATGTGAGAGAAGGGTTGGTTGATAAGTCACTCTCCCTGATGCAGAAAATGAAGGACATGGGTTTTGTTTCCTTTCTCAATTACAACAACATAATGTCCCTGTACACGCAAACCCAACAATATGAGAAAGTCCCTGGTGTTCTGGAACAGATGAAGAAGGATGGTGTTCCTCCAAACATTTTCAGCTACAGGATATGCATAAACTCATATTGCGTGAGAGGTGACCTCGCAAATGTGGAGAAACTGTTGGAGGAGATGGAGAGGGAACCCCATATTGGCATAGATTGGATTACATACTCTATGGTGACCAATTTCTACATAAAAGCAGACATGAGGGAGAAGGCTCTGGTGTGCCTAATGAAGTGTGAGAAAAAGACACACAGGGGCAATACAGTTGCCTACAACCATCTGATTTCACACAATGCAGCTCTTAGGAGCAAGGGGGGCATGATGAGAGCTTGGAAGCTCCAGAAGGCCAACTGCAAGAAGCAGCTTAATAGGGAGTATATAACAATGTTGGGTTGCTTGGTGAAGCTGGGGGAGCTTGATAAAGCTGAAAAAGTACTCGGTGAGTGGGAGTTATCTGGTAACACTTGTGATTTCAGAGTGCCTAACATCCTTCTGATTGGGTATTGCCAAAGGGGATTGGTTGAGAAGGCAGAAGCACTTCTCCGAAAAATGGTTGCGGAAGGGAAGACGCCAATTCCCAACAGTTGGAGCATCGTTGCATCTGGGTATGTGGCCAAGGAGAACATGGAGAAGGCATTTCAGTGCATGAAGGAAGCTGTGGCTGTGCATGCACAGAATAAACGGTGGAGACCAAAAGTTGATGTCATTTCCAGCATATTCAGTTGGGTCACTAATAACAGAGATATAGAGGAAGCGGAAGATTTTGTCAATTCATGGAAGTCTGTGAATGCAATGAATAGGGGCATGTATCTGTCTTTGATGAAGATGTGTATTAGATATGGGAAGCATGTAGATGGGATTTTAGAAAGTATGAAAGCTGATAATATAGAGATCGATGAAGAGATAAAGGAAACTCTTAACTCATAA

Predicted protein sequences of Glyma06g38110

Limit To All Plant Sequences

>Glyma06g38110.2   sequence type=predicted peptide   gene model=Glyma06g38110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPLAPLFSASRSLAAAAAFLRHCSTAATTNRRNLYSRISPLGDPSISVVPVLDEWIEEGNAVDGPHLHHIIKILRTRNRNTQALEVSEWMSSKGLPISSRDQAVQLDLIGRVHGVESAERYLQSLSDGDKTWKVHGALLNCYVREGLVDKSLSLMQKMKDMGFVSFLNYNNIMSLYTQTQQYEKVPGVLEQMKKDGVPPNIFSYRICINSYCVRGDLANVEKLLEEMEREPHIGIDWITYSMVTNFYIKADMREKALVCLMKCEKKTHRGNTVAYNHLISHNAALRSKGGMMRAWKLQKANCKKQLNREYITMLGCLVKLGELDKAEKVLGEWELSGNTCDFRVPNILLIGYCQRGLVEKAEALLRKMVAEGKTPIPNSWSIVASGYVAKENMEKAFQCMKEAVAVHAQNKRWRPKVDVISSIFSWVTNNRDIEEAEDFVNSWKSVNAMNRGMYLSLMKMCIRYGKHVDGILESMKADNIEIDEEIKETLNS*

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