Glyma06g38090 - SoyBase

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Report for Sequence Feature Glyma06g38090

Feature Type:	gene_model
Chromosome:	Gm06
Start:	40905505
stop:	40911147
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g38090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G38980	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 44 Blast hits to 44 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 8; Plants - 24; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). \| chr4:18166898-18167740 REVERSE LENGTH=280	SoyBase	E_val: 2.00E-11	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1KDY2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KDY2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g38090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g38090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g246300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g38090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g38090

Limit To All Plant Sequences

>Glyma06g38090.2   sequence type=transcript   gene model=Glyma06g38090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAATAATTTAATTTGGGTATAATTTTGCCATAGTTGGCTTTGGCTTTTACCTCAGTTGAAGAAGCTAAAAAGAATACTGACATATTTACGTGTAGTCTCGCTGGTTTTCGTTGCTTCCTTTCTTCGTTGCGACGCCAATGGCTTCTACGGGCGAAAAAGAGTTTTAATTTTTTGTGCGTAATTTGCTGTTTCTTCAATGTTGCTGGCGTAAATTGGTTTAGCGTCTACTACTGATTATTGTGTTATTGAGAACAAAAACAGTAAGAGCAATGGATGTCGAAGATGCAGAGAATGAAGTTTCAGTTTCATCTGCTATTCTCAATTCGATAGCATCTCGGCAGAATGAAGTTCTTTCTCCAGAAGATCTTGCTTGGGTTGAATCCTGCCTAGTTAAAGATTCTGATATTTCAGACACTGATTGGATCCCTTTGAAAAATGCTTTATTAGATATTATCAGCTCCCAACCTCAATCTTTCAGCACTGAAGGAGAAGACGTTAAAATTCCTCCCTACATTATTAGTTCTGAATATGCTAATACTGCAACAACTTCTGATGAGAAACTTAATCTGCAATCTTCAACTTCTGATGAGAAACTTATTATTCTGCAATCTTCAACTTCTGATGAGAAACTTATTCTGCAATCTTCAACTTCTGATGGGAAACACTTATCTGAGCCTTCTTCAACTTATAATGTTAATTCATTACTGATGGCAGTAGAGACAAGCACCGATGAAATTCCAGATGATGAAAAGACTGGTACTTTGCCATCTATCAATCCTTTTCTGCCAACTTATAAGGAACACCTGAAGGAGGAGAATGAAACCATTGATTCTGGACTTAATCTGGATTCTTCCTCTTATGAGATGGAGCACCTTGCCGAGAATATCTTCAAAATCTGGGATTTTGATATTCAATCTGAGGAAGGTGAACTGGTTAAACAGTTGGACAAAGCCCTATCAGAGAATTCCTTTCAAACAGTGCCACCATCTTTTGATGATTCATTGAAGTTGAAGGATAGCTCACTCGATGATCTTATTGCTGGCATTGCTGACTTATCATTAAATAAAAATGTCTAGAGTTCTCTGATTTTTTAACTCTGGTGAAGATTGTTCTGTTAAATTATGTTACTTTCAAGTATTAGCATTAGTATTTAGAAGTTAAAAGCCTTTTTTGCTTGTTAGTTAAATTTATTTTTATTCGGAACAATGACGAGGCCCTGAGGTATCTTTGCAATATAGGACCCTCTTCTGCTCTAATACAAAACCACCTGTGATATGGATTGTGAAAACAGGACATACATGAAATTAGTGCTTATTTTATGACCTTGTTTCTTACAGTGAGAAGTCTGGACTGGATGATGGATACTTATTTTATAATCCATGTGCTTATCTAAGTTATGAACACATTGCCTCTATTGAGTTGTACCAACAATCATTTATTAACCATTTAAC

Coding sequences of Glyma06g38090

Limit To All Plant Sequences

>Glyma06g38090.1   sequence type=CDS   gene model=Glyma06g38090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTACGGGCGAAAAAGCAATGGATGTCGAAGATGCAGAGAATGAAGTTTCAGTTTCATCTGCTATTCTCAATTCGATAGCATCTCGGCAGAATGAAGTTCTTTCTCCAGAAGATCTTGCTTGGGTTGAATCCTGCCTAGTTAAAGATTCTGATATTTCAGACACTGATTGGATCCCTTTGAAAAATGCTTTATTAGATATTATCAGCTCCCAACCTCAATCTTTCAGCACTGAAGGAGAAGACGTTAAAATTCCTCCCTACATTATTAGTTCTGAATATGCTAATACTGCAACAACTTCTGATGAGAAACTTAATCTGCAATCTTCAACTTCTGATGAGAAACTTATTATTCTGCAATCTTCAACTTCTGATGAGAAACTTATTCTGCAATCTTCAACTTCTGATGGGAAACACTTATCTGAGCCTTCTTCAACTTATAATGTTAATTCATTACTGATGGCAGTAGAGACAAGCACCGATGAAATTCCAGATGATGAAAAGACTGGTACTTTGCCATCTATCAATCCTTTTCTGCCAACTTATAAGGAACACCTGAAGGAGGAGAATGAAACCATTGATTCTGGACTTAATCTGGATTCTTCCTCTTATGAGATGGAGCACCTTGCCGAGAATATCTTCAAAATCTGGGATTTTGATATTCAATCTGAGGAAGGTGAACTGGTTAAACAGTTGGACAAAGCCCTATCAGAGAATTCCTTTCAAACAGTGCCACCATCTTTTGATGATTCATTGAAGTTGAAGGATAGCTCACTCGATGATCTTATTGCTGGCATTGCTGACTTATCATTAAATAAAAATGTCTAG

>Glyma06g38090.2   sequence type=CDS   gene model=Glyma06g38090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGTCGAAGATGCAGAGAATGAAGTTTCAGTTTCATCTGCTATTCTCAATTCGATAGCATCTCGGCAGAATGAAGTTCTTTCTCCAGAAGATCTTGCTTGGGTTGAATCCTGCCTAGTTAAAGATTCTGATATTTCAGACACTGATTGGATCCCTTTGAAAAATGCTTTATTAGATATTATCAGCTCCCAACCTCAATCTTTCAGCACTGAAGGAGAAGACGTTAAAATTCCTCCCTACATTATTAGTTCTGAATATGCTAATACTGCAACAACTTCTGATGAGAAACTTAATCTGCAATCTTCAACTTCTGATGAGAAACTTATTATTCTGCAATCTTCAACTTCTGATGAGAAACTTATTCTGCAATCTTCAACTTCTGATGGGAAACACTTATCTGAGCCTTCTTCAACTTATAATGTTAATTCATTACTGATGGCAGTAGAGACAAGCACCGATGAAATTCCAGATGATGAAAAGACTGGTACTTTGCCATCTATCAATCCTTTTCTGCCAACTTATAAGGAACACCTGAAGGAGGAGAATGAAACCATTGATTCTGGACTTAATCTGGATTCTTCCTCTTATGAGATGGAGCACCTTGCCGAGAATATCTTCAAAATCTGGGATTTTGATATTCAATCTGAGGAAGGTGAACTGGTTAAACAGTTGGACAAAGCCCTATCAGAGAATTCCTTTCAAACAGTGCCACCATCTTTTGATGATTCATTGAAGTTGAAGGATAGCTCACTCGATGATCTTATTGCTGGCATTGCTGACTTATCATTAAATAAAAATGTCTAG

Predicted protein sequences of Glyma06g38090

Limit To All Plant Sequences

>Glyma06g38090.1   sequence type=predicted peptide   gene model=Glyma06g38090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTGEKAMDVEDAENEVSVSSAILNSIASRQNEVLSPEDLAWVESCLVKDSDISDTDWIPLKNALLDIISSQPQSFSTEGEDVKIPPYIISSEYANTATTSDEKLNLQSSTSDEKLIILQSSTSDEKLILQSSTSDGKHLSEPSSTYNVNSLLMAVETSTDEIPDDEKTGTLPSINPFLPTYKEHLKEENETIDSGLNLDSSSYEMEHLAENIFKIWDFDIQSEEGELVKQLDKALSENSFQTVPPSFDDSLKLKDSSLDDLIAGIADLSLNKNV*

>Glyma06g38090.2   sequence type=predicted peptide   gene model=Glyma06g38090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVEDAENEVSVSSAILNSIASRQNEVLSPEDLAWVESCLVKDSDISDTDWIPLKNALLDIISSQPQSFSTEGEDVKIPPYIISSEYANTATTSDEKLNLQSSTSDEKLIILQSSTSDEKLILQSSTSDGKHLSEPSSTYNVNSLLMAVETSTDEIPDDEKTGTLPSINPFLPTYKEHLKEENETIDSGLNLDSSSYEMEHLAENIFKIWDFDIQSEEGELVKQLDKALSENSFQTVPPSFDDSLKLKDSSLDDLIAGIADLSLNKNV*

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