Glyma06g38062 - SoyBase

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Report for Sequence Feature Glyma06g38062

Feature Type:	gene_model
Chromosome:	Gm06
Start:	40840622
stop:	40842731
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g38062

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G07050	AT	Annotation by Michelle Graham. TAIR10: nodulin MtN21 /EamA-like transporter family protein \| chr5:2191533-2193416 REVERSE LENGTH=402	SoyBase	E_val: 3.00E-22	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
UniRef100_B9RU50	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 5NG4, putative n=1 Tax=Ricinus communis RepID=B9RU50_RICCO	SoyBase	E_val: 5.00E-23	ISS
UniRef100_I1N8N1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N8N1_SOYBN	SoyBase	E_val: 3.00E-25	ISS

Expression Patterns of Glyma06g38062

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g38062 not represented in the dataset	Glyma06g38062 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g38062 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g246000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g38062

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g38062

Limit To All Plant Sequences

>Glyma06g38062.2   sequence type=transcript   gene model=Glyma06g38062   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAGGTACACTGTAGTCAATTGCAGTTACCTTTGTCATGGAGCATAAACCATCTGTTTCGACCATTGGCTGGGACATGAACCTTCTTGCTGCAGCCTATGATGGAATAATATCATCAGGTATCACCTACTATGTTCAAGGGATTGTCATGCAGAAAAAAGGGCCTATTTTCGTTACTACTTTCAACCCTTTGATCCATCATGGGTGCCTTCATCCTTGCAGAAAAAATATATCTTGGAAGGTAAGTACTCAATACTCATATTCACTCCCAATGAACATATCATGTTTTTAGGCACAAAGAAAGAAGCTTATAAGTTTTAATTGACTCTCTTTTGTTTCATAAACTAAAAGTTTGGTGTTTCATACATAAAAGTTGAAACATCACAATCTTAAAAAGCTCAAACTTTGAAACAGTGGTAAACAACAATTATTGATGTGGATTTATATGCATGTGATTTCAGGGTCATTGGAGCTATTCTCATAGTAATGGGACTTTACTCAATTCTCTAGGGCAAACACAAGGAGAACAAAGAGAAAGAGACAGAGATAACCATTGAGGTATTAAAGTGTTGTTCAGAAAATAGGATGACATTGGAGACTGTGGTAGAAGATGCTGAAACAAACAACGACATTGAGATGCAAAAGGGTGAAGCCTCAAGAAAGTTAAGGGTAGCCATTGGTGTTCAAAAAGTTTAAAGTGGTTAAGATTAGAAAGGAAAGGGATGAATAATAATAGAGGCTGCAATGAAAAAAGGGGTCTTTAATTGAGAGCAGAGAAATTGAAAGGGGTTTTGTTTTGTGTACTCACCATCTTTCTTCGGAAAATTAACTAAGGCTTATTTTTTTTCTTTCTTTCTTGTATTTTGATTAGGACCTTATGTGTGGACCTTACTATCCATAATGTAACTTAAATTTTGCACACTTAGGTGAAAGGAAAATTGACATTTGCAGAAATTCTCTCTCTCTCTTATGACAGGTGTAAATGTTTTTTTTTTTCTTGTGTAAGAGATCATTGGTGTCTTAATTAATTGGGTTAGAGATTAATCTTGCTCGTAGTACATCGTGAATTTAAAAGAATCTTACATATAGATAATGAGAATTGAAAACAAGTTAGATACACAATCTAATCATTCATGAAATTATTTTATAATTTCAGCATTAGATGATGCTTCTTTACCATCTTAATTAATTGGAGCTAAAACTTATCTAATCCTATAAGACACGAGTTTCCTGATACATGGTTCACAGAATATTAAAAGAATGACAAAGTAAAGTAAGGACACGACAACACAAAACCTGAATATTACATGCGAATGTTTGAAAGAAAGCAATCAGAGCATTATCTATATTCTATATCATGTTACAATTGTATGCAAATTTATGATACATGAACAAAATGGATTTGTTTCAGTTAAGTTTGAAATCCTAGTTAATTTCCCAAGGTTAACCAAACATACAGAGTAGTAGTAGAGCCTAACAAAACAAAAACAGAGTAGATATTTACTGAAAAGAAAATACTTATTATATTATAAATATAAAAATTCTTACTTCTTCCTTTAGACTTCCCCCTGGCCTCTTCACATTCTGCTAATTTTTATCTAATGTATTATGTTCTTTTCCTATTTTCTATTAATTTCACCATCATTTTCATTTTTTGACTTCATTACTATGTTCTTATAATGAATTTCTTTAGTTTTGGGTATTTTTGGTTTTTGAGAATTTATAAGTGTAATCTAAGTAATTTAGTTTTTATTATAATATCTAAAATATCAGTCATCCCACTTCCTACTCTCCTGCTATAACATTTTCTGAGCTACCATCGTATATCCCTATTAAGTTCTAAGCTTTTTAAAATTAGCATTATCAGTACCATTACATAAATTAAACTGCATCAATTAGCATCTATTTAAAGTCAAT

Coding sequences of Glyma06g38062

Limit To All Plant Sequences

>Glyma06g38062.1   sequence type=CDS   gene model=Glyma06g38062   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCATAAACCATCTGTTTCGACCATTGGCTGGGACATGAACCTTCTTGCTGCAGCCTATGATGGAATAATATCATCAGGTATCACCTACTATGTTCAAGGGATTGTCATGCAGAAAAAAGGGCCTATTTTCGTTACTACTTTCAACCCTTTGATCCATCATGGGTGCCTTCATCCTTGCAGAAAAAATATATCTTGGAAGGGTCATTGGAGCTATTCTCATAGTAATGGGACTTTACTCAATTCTCTAGGGCAAACACAAGGAGAACAAAGAGAAAGAGACAGAGATAACCATTGA

>Glyma06g38062.2   sequence type=CDS   gene model=Glyma06g38062   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCATAAACCATCTGTTTCGACCATTGGCTGGGACATGAACCTTCTTGCTGCAGCCTATGATGGAATAATATCATCAGGTATCACCTACTATGTTCAAGGGATTGTCATGCAGAAAAAAGGGCCTATTTTCGTTACTACTTTCAACCCTTTGATCCATCATGGGTGCCTTCATCCTTGCAGAAAAAATATATCTTGGAAGGTAAGTACTCAATACTCATATTCACTCCCAATGAACATATCATGTTTTTAG

Predicted protein sequences of Glyma06g38062

Limit To All Plant Sequences

>Glyma06g38062.1   sequence type=predicted peptide   gene model=Glyma06g38062   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEHKPSVSTIGWDMNLLAAAYDGIISSGITYYVQGIVMQKKGPIFVTTFNPLIHHGCLHPCRKNISWKGHWSYSHSNGTLLNSLGQTQGEQRERDRDNH*

>Glyma06g38062.2   sequence type=predicted peptide   gene model=Glyma06g38062   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEHKPSVSTIGWDMNLLAAAYDGIISSGITYYVQGIVMQKKGPIFVTTFNPLIHHGCLHPCRKNISWKVSTQYSYSLPMNISCF*

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