Glyma06g38010 - SoyBase

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Report for Sequence Feature Glyma06g38010

Feature Type:	gene_model
Chromosome:	Gm06
Start:	40778530
stop:	40779603
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g38010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G59820	AT	Annotation by Michelle Graham. TAIR10: LETM1-like protein \| chr3:22098306-22101759 REVERSE LENGTH=755	SoyBase	E_val: 3.00E-116	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
PTHR14009	Panther	LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN	JGI		ISS
PTHR14009:SF1	Panther	LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN	JGI		ISS
PF07766	PFAM	LETM1-like protein	JGI		ISS
UniRef100_G7KSF6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: LETM1 and EF-hand domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KSF6_MEDTR	SoyBase	E_val: 3.00E-137	ISS
UniRef100_UPI000233EE18	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EE18 related cluster n=1 Tax=unknown RepID=UPI000233EE18	SoyBase	E_val: 2.00E-149	ISS

Expression Patterns of Glyma06g38010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g38010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g245600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g38010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g38010

Limit To All Plant Sequences

>Glyma06g38010.1   sequence type=CDS   gene model=Glyma06g38010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTAAACAGAAAAAGGAAGCTTCACCACAGAAATGCGATGAAGCTGTTGAAGGCTTGAGCAGCATTAAAGCAAAAGCTAAGGCTAAAAAAATGCAAGAACCACAGAAGAGTGCGGATTCTATTATAAAGAAATTATGGGTTAAGATTTTAGGAATTGGTCTAGCATTCAGAACTATAATGTCAATGAGCAGGGATGACAGGGCAAAGAAGTTTCGTCATTGGTGGGATGAATTTAAATATACCCTGCAACACTACTATTTTGGTACAAAACTACTTTGGGCTAATATTAGGATAAGCTCCAGATTATTGTTGAAACTTGTCGGTGGAAAGAGTCTTTCTAGAAGGGAGAGGCAACAACTCACAAGGACAACAATTGATATTTTCAGGCTAGTTCCATTTGTTGTATTTATCATAGTTCCATTCGTGGAGTTATTGTTGGCAGTATTCCTTAAATTATTTCCCAACATGTTGCCTTCCATTTTCCAGGACAAGATGAAAGAACTGGAGGCATTGAAAAGAAGGTTAAATGCAAGAATAGAATATGCCAAGTTTCTTCAAGATACTGTAAAAGAAATGGCAAAAACAGGTGCTCGAGTTTCTAACGATGAAATCTTAGGATTTGCCAAATTATTTAATGATGAGCTCACCCTGGATAACATTAGCAGGTTGGATTTGCCAAATTATTTAATGATGAACATGCCTCGCTTGGTAAATATGTGTAAATATATGGGCATCAGCCTGTATGGAACTGATGCATATTTGCGTTAG

Predicted protein sequences of Glyma06g38010

Limit To All Plant Sequences

>Glyma06g38010.1   sequence type=predicted peptide   gene model=Glyma06g38010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TKQKKEASPQKCDEAVEGLSSIKAKAKAKKMQEPQKSADSIIKKLWVKILGIGLAFRTIMSMSRDDRAKKFRHWWDEFKYTLQHYYFGTKLLWANIRISSRLLLKLVGGKSLSRRERQQLTRTTIDIFRLVPFVVFIIVPFVELLLAVFLKLFPNMLPSIFQDKMKELEALKRRLNARIEYAKFLQDTVKEMAKTGARVSNDEILGFAKLFNDELTLDNISRLDLPNYLMMNMPRLVNMCKYMGISLYGTDAYLR*

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