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Report for Sequence Feature Glyma06g37990

Feature Type:gene_model
Chromosome:Gm06
Start:40731101
stop:40731598
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g37990
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G05710AT Annotation by Michelle Graham. TAIR10: Pleckstrin homology (PH) domain superfamily protein | chr5:1715943-1716377 FORWARD LENGTH=144 SoyBaseE_val: 3.00E-60ISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005543GO-mf Annotation by Michelle Graham. GO Molecular Function: phospholipid binding SoyBaseN/AISS
PTHR22903Panther PLEKHH PROTEIN JGI ISS
PF00169PFAM PH domain JGI ISS
UniRef100_I1KDY0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KDY0_SOYBN SoyBaseE_val: 9.00E-85ISS
UniRef100_Q8LG37UniRef Annotation by Michelle Graham. Most informative UniRef hit: AtPH1-like protein n=1 Tax=Arabidopsis thaliana RepID=Q8LG37_ARATH SoyBaseE_val: 7.00E-58ISS

Expression Patterns of Glyma06g37990
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g37990 not represented in the dataset
Glyma06g37990 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g37990 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g245300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g37990
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g37990
>Glyma06g37990.2   sequence type=CDS   gene model=Glyma06g37990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAAGCCTGTGGTGCGTGACAATCGGCATGACGGACAACGCCACCGACTACGACAGCGTTGAGTTCTGGTCGAACCCCGAGCGGACCGGCGGCTGGCTCACCAAGCAGGGCGAGTACATCAAGACTTGGCACCATCGTTGGTTTGTCCTCAAGCAAGGCAAGCTCTTCTGGTTCAAGGACTCCACCGTCACGAGTGCATCTCGTCCACGCGATGTGGTCCCCGTCGTCACGTACCTCACCGTCAAAGGCGCCAAAGACATCCTCAACAAGCCTAATGCCTTCGAGCTCTCCACGCGCTCCAACACCATGTACTTCATCGCCAACTCCAAGAAGGAGAAGGAGGATTGGATCAACTCTATGGCAGGAGCAGAAGGAAGCTCATTTTCATCCTTTTCTATTAGTGCCCAGGTGATAATTTTTGTATCTTTTTGCAACCTTTTATCGTGTCTTCTTATGGATTAA
Predicted protein sequences of Glyma06g37990
>Glyma06g37990.2   sequence type=predicted peptide   gene model=Glyma06g37990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSLWCVTIGMTDNATDYDSVEFWSNPERTGGWLTKQGEYIKTWHHRWFVLKQGKLFWFKDSTVTSASRPRDVVPVVTYLTVKGAKDILNKPNAFELSTRSNTMYFIANSKKEKEDWINSMAGAEGSSFSSFSISAQVIIFVSFCNLLSCLLMD*






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